Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 61total RNA-seq
  • 49ChIP-seq
  • 46ATAC-seq
  • 9DNase-seq
  • 6single cell RNA-seq
  • 5Hi-C
  • 2WGBS
  • 1FAIRE-seq
  • 1pCHi-C
Assay category
  • 67Transcription
  • 56DNA accessibility
  • 49DNA binding
  • 53D chromatin structure
  • 2DNA methylation
Target of assay
  • 34histone
  • 34histone modification
  • 23broad histone mark
  • 11narrow histone mark
  • 10control
  • 5transcription factor
  • 1RNA binding protein
Date released
  • 66February, 2021
  • May, 2019
  • 47October, 2019
  • 35February, 2023
  • 11July, 2019
  • 6August, 2021
  • 5June, 2019
  • 4March, 2020
  • 3February, 2020
  • 3November, 2017
Available data
  • 130bam
  • 111bigWig
  • 90bed narrowPeak
  • 68tsv
  • 40bigBed narrowPeak
  • 13bed broadPeak
  • 13bigBed broadPeak
  • 11bed bed3+
  • 6tagAlign
  • 3fastq
  • 3hic
  • 2bedpe bed3+
  • 2hdf5
  • 1bed bedMethyl
  • 1bigBed bedMethyl
  • 1tar
Organism
  • 180Homo sapiens
Biosample type
  • 83tissue
  • 66cell line
  • 31primary cell
Organ
  • 944pancreas
  • 791liver
  • 684connective tissue
  • 519epithelium
  • 491adipose tissue
  • 372heart
  • 349kidney
  • 258brain
  • 186vasculature
  • 180blood vessel
  • 159bone element
  • 136artery
  • 115limb
  • 89musculature of body
  • 69blood
  • 69bodily fluid
  • 61eye
  • 43nerve
  • 37embryo
  • 25spleen
  • 22vein
  • 20lung
  • 18ureter
  • 16skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 180AMP
Genome assembly (visualization)
  • 148GRCh38
  • 120hg19
Lab
  • 180AMP-T2D consortium
Audit category:
  • 1audit script error
month_released!
  • May, 2019
BIOSAMPLE
ASSAY

180 results

search-icontable-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
Hi-C
WGBS
FAIRE-seq
pCHi-C
tissue
coronary artery1362
tibial artery12312
aorta14121
ascending aorta21
thoracic aorta21
cell line
smooth muscle cell of the coronary artery5268
primary cell
endothelial cell of umbilical vein17221
brain microvascular endothelial cell311
endothelial cell of coronary artery1
endothelial cell of hepatic sinusoid1
kidney capillary endothelial cell1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego