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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
79
total RNA-seq
30
DNase-seq
24
ChIP-seq
16
ATAC-seq
4
small RNA-seq
3
pCHi-C
3
single cell RNA-seq
2
Hi-C
1
FAIRE-seq
1
RRBS
Assay category
86
Transcription
47
DNA accessibility
24
DNA binding
2
3D chromatin structure
1
DNA methylation
Target of assay
160
histone
histone modification
105
narrow histone mark
55
broad histone mark
26
control
1
RNA binding protein
1
transcription factor
Date released
150
February, 2021
28
June, 2019
16
July, 2019
14
November, 2017
12
February, 2020
9
February, 2023
9
October, 2019
4
October, 2017
May, 2019
2
March, 2020
2
November, 2018
1
May, 2021
Available data
134
bam
107
bigWig
88
txt
84
tsv
40
bed narrowPeak
32
bed bed3+
32
bigBed narrowPeak
31
bed broadPeak
31
bigBed broadPeak
19
tagAlign
7
fastq
5
bed bed3
2
hdf5
1
bed bedMethyl
1
bigBed bedMethyl
Organism
247
Homo sapiens
Biosample type
236
tissue
11
primary cell
Organ
794
pancreas
688
liver
606
connective tissue
459
adipose tissue
429
epithelium
322
kidney
288
heart
159
bone element
vasculature
146
blood vessel
118
artery
96
brain
72
limb
68
blood
68
bodily fluid
62
musculature of body
58
eye
25
embryo
20
lung
19
nerve
19
spleen
18
ureter
16
skeleton
7
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
246
AMP
1
T1D
Genome assembly (visualization)
111
GRCh38
109
hg19
Lab
246
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
85
inconsistent ontology term
month_released!
May, 2019
organ_slims!
vasculature
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
247 results
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RNA microarray
total RNA-seq
DNase-seq
ChIP-seq
ATAC-seq
small RNA-seq
pCHi-C
single cell RNA-seq
Hi-C
FAIRE-seq
RRBS
tissue
bone element
84
bone tissue
58
brain
1
14
3
1
1
cerebellum (Hemisphere)
1
1
2
1
1
frontal cortex
2
2
1
1
+ See 42 more…
primary cell
astrocyte of the cerebellum
1
2
1
brain pericyte
1
1
cerebellar granule cell
2
Purkinje cell
1
astrocyte of the hippocampus
1
+ See 1 more…
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