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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
253
ChIP-seq
68
DNase-seq
24
total RNA-seq
12
ATAC-seq
7
Hi-C
4
small RNA-seq
3
pCHi-C
3
single cell RNA-seq
2
RRBS
1
FAIRE-seq
1
WGBS
Assay category
253
DNA binding
81
DNA accessibility
31
Transcription
7
3D chromatin structure
3
DNA methylation
Target of assay
209
histone
209
histone modification
124
narrow histone mark
85
broad histone mark
44
control
3
RNA binding protein
3
transcription factor
Date released
159
October, 2019
91
November, 2017
62
June, 2019
May, 2019
23
July, 2019
16
October, 2017
15
February, 2020
6
February, 2021
3
March, 2020
2
November, 2018
1
February, 2023
Available data
322
bam
282
bigWig
264
bed narrowPeak
180
bigBed narrowPeak
118
tagAlign
83
bed broadPeak
74
bigBed broadPeak
71
bed bed3+
34
tsv
21
fastq
3
bed bedMethyl
3
bigBed bedMethyl
3
hdf5
1
bed bed3
1
tagAlign bed3+
Organism
378
Homo sapiens
Biosample type
357
tissue
21
primary cell
Organ
944
pancreas
791
liver
684
connective tissue
519
epithelium
491
adipose tissue
372
heart
349
kidney
258
brain
186
vasculature
180
blood vessel
159
bone element
136
artery
115
limb
89
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
378
AMP
Genome assembly (visualization)
283
GRCh38
229
hg19
Lab
378
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
4
missing controlled_by
month_released!
May, 2019
BIOSAMPLE
ASSAY
378 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
Hi-C
small RNA-seq
pCHi-C
single cell RNA-seq
RRBS
FAIRE-seq
WGBS
tissue
tibial nerve
35
2
5
1
brain
20
14
1
1
1
tibial artery
23
2
1
1
layer of hippocampus
23
caudate nucleus
15
1
1
+ See 91 more…
primary cell
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
brain pericyte
1
1
cerebellar granule cell
2
+ See 2 more…
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