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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
38
DNase-seq
35
ATAC-seq
29
ChIP-seq
21
total RNA-seq
4
Hi-C
4
pCHi-C
1
RRBS
1
WGBS
Assay category
73
DNA accessibility
29
DNA binding
21
Transcription
4
3D chromatin structure
2
DNA methylation
Target of assay
22
histone
22
histone modification
14
broad histone mark
8
narrow histone mark
6
control
1
RNA binding protein
1
transcription factor
Date released
48
October, 2019
39
June, 2019
31
February, 2023
May, 2019
6
February, 2021
6
July, 2019
3
February, 2020
Available data
92
bed narrowPeak
72
bam
60
bigWig
58
bigBed narrowPeak
38
bed bed3+
38
bed broadPeak
38
bigBed broadPeak
7
tsv
2
bed bedMethyl
2
bigBed bedMethyl
Organism
133
Homo sapiens
Biosample type
128
tissue
5
primary cell
Organ
944
pancreas
791
liver
684
connective tissue
519
epithelium
491
adipose tissue
372
heart
349
kidney
258
brain
186
vasculature
180
blood vessel
159
bone element
136
artery
115
limb
89
musculature of body
69
blood
69
bodily fluid
61
eye
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
133
AMP
Genome assembly (visualization)
93
hg19
66
GRCh38
Lab
133
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
month_released!
May, 2019
organ_slims!
nerve
BIOSAMPLE
ASSAY
133 results
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DNase-seq
ATAC-seq
ChIP-seq
total RNA-seq
Hi-C
pCHi-C
RRBS
WGBS
tissue
tibial artery
2
1
23
1
islet of Langerhans
1
3
14
4
retina
3
15
3
muscle of arm
17
muscle of leg
13
1
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primary cell
retinal pigment epithelial cell
1
3
1
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