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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
36
DNase-seq
16
ChIP-seq
8
ATAC-seq
7
total RNA-seq
4
Hi-C
1
WGBS
Assay category
44
DNA accessibility
16
DNA binding
7
Transcription
4
3D chromatin structure
1
DNA methylation
Target of assay
histone
43
histone modification
30
broad histone mark
16
control
13
narrow histone mark
Date released
32
June, 2019
26
October, 2019
6
February, 2021
5
July, 2019
3
February, 2020
May, 2019
Available data
65
bam
44
bed narrowPeak
43
bigWig
36
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
36
bigBed narrowPeak
7
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
72
Homo sapiens
Biosample type
72
tissue
Organ
794
pancreas
689
liver
606
connective tissue
459
adipose tissue
429
epithelium
322
kidney
heart
159
bone element
151
vasculature
146
blood vessel
118
artery
96
brain
72
limb
68
blood
68
bodily fluid
62
musculature of body
58
eye
25
embryo
20
lung
19
nerve
19
spleen
18
ureter
16
skeleton
7
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
72
AMP
Genome assembly (visualization)
49
GRCh38
48
hg19
Lab
72
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
month_released!
May, 2019
organ_slims!
heart
target.investigated_as!
histone
BIOSAMPLE
ASSAY
72 results
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DNase-seq
ChIP-seq
ATAC-seq
total RNA-seq
Hi-C
WGBS
tissue
tibial nerve
2
11
1
5
muscle of arm
17
muscle of leg
13
1
tibial artery
2
5
1
1
gastrocnemius medialis
1
4
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