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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
23
ChIP-seq
7
DNase-seq
5
Hi-C
5
total RNA-seq
4
single cell RNA-seq
2
WGBS
1
ATAC-seq
1
FAIRE-seq
1
RRBS
1
pCHi-C
Assay category
23
DNA binding
9
DNA accessibility
9
Transcription
5
3D chromatin structure
3
DNA methylation
Target of assay
17
histone
17
histone modification
9
broad histone mark
8
narrow histone mark
4
control
2
RNA binding protein
2
transcription factor
Date released
May, 2019
21
October, 2019
9
July, 2019
6
November, 2017
5
June, 2019
4
August, 2021
4
March, 2020
1
February, 2020
Available data
38
bam
34
bigWig
23
bed narrowPeak
22
bigBed narrowPeak
13
bed broadPeak
13
bigBed broadPeak
10
tsv
9
bed bed3+
6
fastq
3
hic
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hdf5
1
tar
Organism
50
Homo sapiens
Biosample type
35
primary cell
15
tissue
Organ
936
pancreas
791
liver
683
connective tissue
518
epithelium
490
adipose tissue
372
heart
349
kidney
258
brain
186
vasculature
180
blood vessel
159
bone element
artery
115
limb
89
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
19
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
50
AMP
Genome assembly (visualization)
36
hg19
27
GRCh38
Lab
50
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
month_released!
May, 2019
organ_slims!
artery
BIOSAMPLE
ASSAY
50 results
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ChIP-seq
DNase-seq
Hi-C
total RNA-seq
single cell RNA-seq
WGBS
ATAC-seq
FAIRE-seq
RRBS
pCHi-C
primary cell
endothelial cell of umbilical vein
17
2
2
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
endothelial cell of hepatic sinusoid
1
kidney capillary endothelial cell
1
+ See 1 more…
tissue
aorta
1
1
4
2
1
ascending aorta
1
2
thoracic aorta
2
1
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