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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 61total RNA-seq
  • 52ChIP-seq
  • 46ATAC-seq
  • 11DNase-seq
  • 6single cell RNA-seq
  • 5Hi-C
  • 2WGBS
  • 1FAIRE-seq
  • 1RRBS
  • 1pCHi-C
Assay category
  • 67Transcription
  • 58DNA accessibility
  • 52DNA binding
  • 53D chromatin structure
  • 3DNA methylation
Target of assay
  • 35histone
  • 35histone modification
  • 23broad histone mark
  • 12narrow histone mark
  • 11control
  • 6transcription factor
  • 2RNA binding protein
Date released
  • 66February, 2021
  • May, 2019
  • 47October, 2019
  • 35February, 2023
  • 12July, 2019
  • 7June, 2019
  • 6August, 2021
  • 6November, 2017
  • 4March, 2020
  • 3February, 2020
Available data
  • 135bam
  • 116bigWig
  • 94bed narrowPeak
  • 68tsv
  • 44bigBed narrowPeak
  • 17bed broadPeak
  • 17bigBed broadPeak
  • 13bed bed3+
  • 6fastq
  • 6tagAlign
  • 3hic
  • 2bed bedMethyl
  • 2bedpe bed3+
  • 2bigBed bedMethyl
  • 2hdf5
  • 1tar
Organism
  • 186Homo sapiens
Biosample type
  • 83tissue
  • 66cell line
  • 37primary cell
Organ
  • 944pancreas
  • 791liver
  • 684connective tissue
  • 519epithelium
  • 491adipose tissue
  • 372heart
  • 349kidney
  • 258brain
  • 186vasculature
  • 180blood vessel
  • 159bone element
  • 136artery
  • 115limb
  • 89musculature of body
  • 69blood
  • 69bodily fluid
  • 61eye
  • 43nerve
  • 37embryo
  • 25spleen
  • 22vein
  • 20lung
  • 18ureter
  • 16skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 186AMP
Genome assembly (visualization)
  • 152GRCh38
  • 126hg19
Lab
  • 186AMP-T2D consortium
Audit category:
  • 1audit script error
  • 1inconsistent ontology term
month_released!
  • May, 2019
BIOSAMPLE
ASSAY

186 results

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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
Hi-C
WGBS
FAIRE-seq
RRBS
pCHi-C
tissue
coronary artery1362
tibial artery12312
aorta14121
ascending aorta21
thoracic aorta21
cell line
smooth muscle cell of the coronary artery5268
primary cell
endothelial cell of umbilical vein17221
brain microvascular endothelial cell311
choroid plexus epithelial cell311
endothelial cell of coronary artery1
endothelial cell of hepatic sinusoid1
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