Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
189
accessible chromatin
171
target gene predictions
93
candidate regulatory elements
84
gene expression
48
chromatin state
44
binding sites
38
differential activity
29
histone modifications
27
variant allelic effects
2
caQTL
2
eQTL
Date released
136
September, 2022
126
February, 2024
126
November, 2021
122
February, 2021
38
March, 2023
36
May, 2021
20
January, 2021
20
June, 2020
20
September, 2023
15
November, 2022
12
February, 2023
May, 2020
7
April, 2020
7
August, 2021
6
August, 2018
6
January, 2020
6
March, 2020
6
October, 2022
5
October, 2019
4
March, 2024
3
August, 2017
2
May, 2022
1
February, 2020
1
January, 2022
1
July, 2020
1
November, 2019
Available data
557
bed bed3+
158
bigWig
108
tsv
45
bed bed9
14
bigBed narrowPeak
6
csv
3
bam
3
bed gappedPeak
3
txt
3
xls
2
bigBed bed9
Organism
727
Homo sapiens
Biosample type
529
primary cell
105
cell line
67
tissue
26
in vitro differentiated cells
Organ
934
epithelium
kidney
450
connective tissue
447
brain
370
musculature of body
311
lung
289
intestine
271
pancreas
251
vasculature
244
heart
234
limb
218
bodily fluid
215
embryo
207
blood
204
skin of body
193
blood vessel
174
large intestine
153
liver
146
extraembryonic component
119
stomach
107
eye
88
bone element
87
mammary gland
86
adipose tissue
84
small intestine
83
uterus
78
prostate gland
73
adrenal gland
placenta
70
artery
64
penis
62
lymph node
61
ureter
50
gonad
48
thymus
45
esophagus
43
spinal cord
34
spleen
26
testis
24
lymphoid tissue
23
ovary
23
thyroid gland
22
nerve
21
lymphatic vessel
21
vein
19
mouth
18
skeleton
16
bronchus
13
breast
13
pituitary gland
12
bone marrow
10
tongue
10
urinary bladder
10
vagina
5
trachea
4
nose
1
pericardium
Project
552
AMP
126
ENCODE
20
KPMP
20
T1D
7
LungMap
2
community
Genome assembly (visualization)
604
hg19
271
GRCh38
month_released!
May, 2020
organ_slims!
kidney
placenta
BIOSAMPLE
TYPE
727 results
search-icon
table-tab-icon
Clear Filters
accessible chromatin
target gene predictions
candidate regulatory elements
gene expression
chromatin state
binding sites
differential activity
histone modifications
variant allelic effects
caQTL
eQTL
primary cell
endothelial cell
15
7
9
2
1
2
2
1
hepatocyte
8
3
1
13
1
1
4
1
foreskin keratinocyte
4
11
4
pancreatic ductal cell
6
3
3
1
3
2
1
endothelial cell of umbilical vein
1
4
6
5
2
+ See 84 more…
cell line
HeLa-S3
55
5
3
1
EndoC_BH1
8
1
8
3
keratinocyte
3
1
choroid plexus epithelial cell
1
1
1
colon epithelial cell
1
1
1
+ See 7 more…
tissue
pigmented layer of retina
20
breast epithelium
1
3
5
2
esophagus squamous epithelium
1
2
6
2
uterus
1
2
3
1
1
1
endometrium cancer
1
1
+ See 13 more…
in vitro differentiated cells
retinal pigment epithelial cell
6
hepatocyte
1
2
1
foreskin keratinocyte
1
1
1
hepatocyte(AFP)
3
mammary gland epithelial cell
1
1
1
+ See 4 more…
See all biosamples
Download