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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 502ChIP-seq
  • 46total RNA-seq
  • 23ATAC-seq
  • 6DNase-seq
  • 5WGBS
  • 4Hi-C
  • 3small RNA-seq
  • 2RRBS
  • 2STARR-seq
  • 2pCHi-C
  • 1single cell RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 502DNA binding
  • 50Transcription
  • 29DNA accessibility
  • 7DNA methylation
  • 43D chromatin structure
  • 1DNA sequencing
Target of assay
  • 338transcription factor
  • 85control
  • 82recombinant protein
  • 76histone modification
  • 75histone
  • 58RNA binding protein
  • 42broad histone mark
  • 33narrow histone mark
  • 23chromatin remodeller
  • 2other context
  • 2other post-translational modification
Date released
  • 315November, 2017
  • May, 2020
  • 63December, 2017
  • 54August, 2017
  • 53November, 2018
  • 40May, 2022
  • 35August, 2021
  • 10July, 2019
  • 7October, 2019
  • 5December, 2019
  • 5January, 2019
  • 3February, 2021
  • 3March, 2020
  • 2June, 2019
  • 1December, 2018
  • 1February, 2020
Available data
  • 488bam
  • 465fastq
  • 452bigWig
  • 414bed narrowPeak
  • 358bigBed narrowPeak
  • 63bed broadPeak
  • 63bigBed broadPeak
  • 36tagAlign
  • 30tsv
  • 13bed bed3+
  • 3bed bedMethyl
  • 3bigBed bedMethyl
  • 3tar
  • 2bedpe bed3+
  • 2hic
  • 1bed bed3
  • 1csv
  • 1hdf5
  • 1vcf
Organism
  • 597Homo sapiens
Biosample type
  • 400cell line
  • 168tissue
  • 15in vitro differentiated cells
  • 14primary cell
Organ
  • 946pancreas
  • 684connective tissue
  • 597liver
  • 524epithelium
  • 491adipose tissue
  • 393heart
  • 354kidney
  • 286brain
  • 236vasculature
  • 230blood vessel
  • 159bone element
  • 141artery
  • 122limb
  • 96musculature of body
  • 69blood
  • 69bodily fluid
  • 61eye
  • 43nerve
  • 37embryo
  • 25spleen
  • 22vein
  • 20lung
  • 18ureter
  • 16skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 597AMP
Genome assembly (visualization)
  • 455hg19
  • 369GRCh38
Lab
  • 526AMP-T2D consortium
  • 40Karen Mohlke, UNC
  • 31Bing Ren, UCSD
Audit category:
  • 27inconsistent control
  • 1inconsistent ontology term
  • 1inconsistent replicate
Audit category:
  • 13missing controlled_by
Audit category:
  • 27inconsistent control read length
  • 8inconsistent control run_type
month_released!
  • May, 2020
BIOSAMPLE
ASSAY

597 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
small RNA-seq
RRBS
STARR-seq
pCHi-C
single cell RNA-seq
whole genome sequencing assay
cell line
HepG237814112211
tissue
liver9524202311111
right lobe of liver1031212
in vitro differentiated cells
hepatocyte15
primary cell
hepatocyte4511
Liver fetal (hepatocyte)1
endothelial cell of hepatic sinusoid1
hepatic stellate cell1
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