Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Annotation Matrix

Click or enter search terms to filter the experiments included in the matrix.

Annotation type
  • 3000target gene predictions
  • 2638pQTL
  • 1709candidate regulatory elements
  • 941chromatin state
  • 685gene expression
  • 484differential activity
  • 343accessible chromatin
  • 180eQTL
  • 93binding sites
  • 74Fine-mapped variants
  • 62variant allelic effects
  • 25caQTL
  • 7sQTL
  • 4variant to gene
  • 3meQTL
  • 1other
  • 1representative DNase hypersensitivity sites
Date released
  • 2636February, 2025
  • 2499September, 2022
  • 1984July, 2026
  • 1021February, 2021
  • 320May, 2026
  • 319February, 2024
  • 286September, 2023
  • 243May, 2021
  • May, 2020
  • 128March, 2020
  • 111November, 2021
  • 102January, 2022
  • 101October, 2022
  • 81August, 2021
  • 70March, 2023
  • 64February, 2020
  • 40May, 2024
  • 35August, 2017
  • 35May, 2022
  • 30March, 2024
  • 28January, 2021
  • 24January, 2020
  • 21July, 2025
  • 19April, 2020
  • 9August, 2018
  • 9May, 2019
  • 8April, 2019
  • 7February, 2023
  • 5October, 2019
  • 4March, 2026
  • 2January, 2018
  • 2January, 2025
  • 2November, 2019
  • 1August, 2020
  • 1August, 2022
  • 1July, 2020
  • 1November, 2020
Available data
  • 5400bed bed3+
  • 3551tsv
  • 866bed bed9
  • 112txt
  • 37bigBed bed9
  • 37bigWig
  • 34bed bed9+
  • 26csv
  • 7bigBed narrowPeak
  • 1bam
Organism
  • 10248Homo sapiens
Collection Tags
  • 2635UK_Biobank
  • 2499EpiMap
  • 1458ENCODE-rE2G
  • 958ENCODE
  • 486DGA
  • 393HDMA
  • 320pyxis
  • 281KPMP
  • 261AMP
  • 235T1D
  • 1744DN
  • 151GTEx
  • 148T2DKP
  • 138 T2DKP
  • 133CATlas
  • 101T2D
  • 101eQTLCatalogue
  • 81BLUEPRINT
  • 55HPAP
  • 26FNIH_projects-heart
  • 24CMDGA
  • 12FNIH_projects-liver
Biosample type
  • 5577tissue
  • 3125primary cell
  • 1236cell line
  • 306in vitro differentiated cells
  • 4stem cell
Organ
  • 3303blood
  • 2830vasculature
  • 2807blood vessel
  • 2789bodily fluid
  • 2653vein
  • 786brain
  • 679kidney
  • 666epithelium
  • 440heart
  • 419lung
  • 377connective tissue
  • 337musculature of body
  • 324intestine
  • 256skin of body
  • 240pancreas
  • 210limb
  • 206large intestine
  • 188liver
  • 180embryo
  • 158extraembryonic component
  • 131stomach
  • 129adipose tissue
  • 111muscle organ
  • 95adrenal gland
  • 94small intestine
  • 92eye
  • 88placenta
  • 88thymus
  • 85uterus
  • 83mammary gland
  • 77bone element
  • 67prostate gland
  • 66ureter
  • 62artery
  • 60__MARKER__
  • 60spleen
  • 56gonad
  • 51penis
  • 46spinal cord
  • 45thyroid gland
  • 44esophagus
  • 40lymph node
  • 30ovary
  • 26testis
  • 21lymphoid tissue
  • 20mouth
  • 19nerve
  • 16skeleton
  • 15lymphatic vessel
  • 14breast
  • 12pituitary gland
  • 12urinary bladder
  • 12vagina
  • 11bronchus
  • 11tongue
  • 6bone marrow
  • 3nose
  • 1embryonic structure
  • 1gallbladder
  • 1pericardium
Project
  • 9785AMP
  • 281KPMP
  • 111ENCODE
  • 32T1D
  • 19LungMap
  • 17community
  • 5ITG
Genome assembly (visualization)
  • 4327hg19
  • 3388GRCh38
  • 4hg18
month_released!
  • May, 2020
software_used.software.name!
  • macs
BIOSAMPLE
TYPE

10250 results

search-icontable-tab-icon
Clear Filters
target gene predictions
pQTL
candidate regulatory elements
chromatin state
gene expression
differential activity
accessible chromatin
eQTL
binding sites
Fine-mapped variants
variant allelic effects
caQTL
sQTL
variant to gene
meQTL
other
representative DNase hypersensitivity sites
tissue
whole blood26351
stomach42401911
heart38372041
head of caudate nucleus86
lung31331611
primary cell
fibroblast2831024216
endothelial cell1739258223
T-cell644
common myeloid progenitor, CD34-positive262713
CD4-positive, alpha-beta T cell5083
cell line
A5493321181
HeLa-S359531
H1-hESC391181
K56230771
MCF-713951
in vitro differentiated cells
hematopoietic multipotent progenitor cell2219101
neural progenitor cell6547
adipocyte7461
cardiomyocytes11
endodermal cell442
stem cell
H1-hESC1
mesenchymal stem cell1
mesendoderm1
undifferentiated ESC (H9 cell line)1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2026 Regents of the University of California.

  • UC San Diego