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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
129
ChIP-seq
93
single cell RNA-seq
67
total RNA-seq
47
ATAC-seq
27
DNase-seq
8
WGBS
4
pCHi-C
3
Hi-C
1
RRBS
1
small RNA-seq
Assay category
161
Transcription
129
DNA binding
74
DNA accessibility
9
DNA methylation
3
3D chromatin structure
Target of assay
95
histone
95
histone modification
57
broad histone mark
38
narrow histone mark
18
control
16
transcription factor
10
RNA binding protein
Date released
92
August, 2021
66
February, 2021
57
April, 2019
40
May, 2024
36
February, 2023
27
June, 2019
22
July, 2019
21
May, 2019
8
March, 2020
8
October, 2019
3
February, 2020
May, 2021
Available data
213
bigWig
198
bam
185
bed narrowPeak
164
tsv
88
bigBed narrowPeak
27
bed bed3+
27
bed broadPeak
27
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
6
tagAlign
3
bedpe bed3+
3
hic
Organism
380
Homo sapiens
Biosample type
312
tissue
66
cell line
2
primary cell
Organ
885
pancreas
connective tissue
492
epithelium
491
adipose tissue
476
liver
390
heart
354
kidney
230
vasculature
227
blood vessel
195
brain
158
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
35
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
380
AMP
Genome assembly (visualization)
255
GRCh38
177
hg19
Lab
340
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
month_released!
May, 2021
November, 2017
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
380 results
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ChIP-seq
single cell RNA-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
pCHi-C
Hi-C
RRBS
small RNA-seq
tissue
heart left ventricle
35
18
3
2
3
4
1
1
1
left cardiac atrium
40
18
1
coronary artery
5
1
36
2
heart
14
1
4
18
1
1
1
heart right ventricle
13
17
1
1
2
1
1
+ See 11 more…
cell line
smooth muscle cell of the coronary artery
6
52
8
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
See all biosamples
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