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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
14
ChIP-seq
12
total RNA-seq
1
GRO-seq
1
pCHi-C
Assay category
14
DNA binding
12
Transcription
Target of assay
12
histone
12
histone modification
narrow histone mark
7
control
4
broad histone mark
3
transcription factor
Date released
10
February, 2018
8
August, 2021
8
December, 2017
May, 2021
1
January, 2018
1
March, 2020
Available data
26
bam
20
bigWig
19
fastq
13
tsv
7
bed narrowPeak
2
bed bed3+
Organism
28
Homo sapiens
Biosample type
19
in vitro differentiated cells
9
cell line
Organ
814
pancreas
731
liver
649
connective tissue
479
adipose tissue
451
epithelium
350
heart
339
kidney
210
vasculature
205
blood vessel
169
brain
158
bone element
135
artery
107
limb
83
musculature of body
68
blood
68
bodily fluid
58
eye
35
nerve
27
embryo
23
spleen
20
lung
18
ureter
16
skeleton
16
vein
2
intestine
2
pericardium
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
28
AMP
Genome assembly (visualization)
20
GRCh38
20
hg19
1
hg18
Lab
28
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
2
inconsistent control read length
month_released!
May, 2021
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
28 results
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Clear Filters
ChIP-seq
total RNA-seq
GRO-seq
pCHi-C
in vitro differentiated cells
pancreatic endoderm
12
4
1
Hepatic endoderm
2
cell line
H1-hESC
8
MCF-7
1
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