Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
61
ChIP-seq
33
DNase-seq
18
total RNA-seq
6
Hi-C
5
RRBS
2
pCHi-C
2
small RNA-seq
1
ATAC-seq
1
GRO-seq
1
WGBS
1
single cell RNA-seq
1
snATAC-seq
Assay category
61
DNA binding
35
DNA accessibility
21
Transcription
6
3D chromatin structure
6
DNA methylation
Target of assay
45
histone
45
histone modification
24
broad histone mark
21
narrow histone mark
13
control
3
transcription factor
Date released
43
June, 2019
26
August, 2017
13
December, 2017
13
February, 2018
10
July, 2019
8
August, 2021
7
May, 2019
6
March, 2020
May, 2021
2
February, 2020
2
January, 2018
2
May, 2022
Available data
95
bigWig
91
bam
74
bed narrowPeak
47
bigBed narrowPeak
46
bed broadPeak
37
bed bed3+
33
bigBed broadPeak
29
fastq
22
tsv
15
tagAlign
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
hic
1
txt
Organism
132
Homo sapiens
Biosample type
83
tissue
27
in vitro differentiated cells
14
primary cell
8
cell line
Organ
885
pancreas
791
liver
682
connective tissue
498
epithelium
491
adipose tissue
390
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
158
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
35
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
132
AMP
Genome assembly (visualization)
100
hg19
80
GRCh38
1
hg18
Lab
132
AMP-T2D consortium
Audit category:
13
inconsistent ontology term
1
audit script error
Audit category:
1
missing controlled_by
Audit category:
3
inconsistent control read length
month_released!
May, 2021
BIOSAMPLE
ASSAY
132 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
DNase-seq
total RNA-seq
Hi-C
RRBS
pCHi-C
small RNA-seq
ATAC-seq
GRO-seq
WGBS
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
1
4
1
1
1
1
muscle of leg
7
13
1
muscle of arm
17
gastrocnemius medialis
1
4
psoas muscle
2
2
1
+ See 4 more…
in vitro differentiated cells
pancreatic endoderm
18
4
1
Hepatic endoderm
4
primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
2
1
1
cell line
H1-hESC
8
See all biosamples
Download