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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
DNase-seq
19
ChIP-seq
6
Hi-C
6
total RNA-seq
5
RRBS
2
small RNA-seq
1
ATAC-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
35
DNA accessibility
19
DNA binding
9
Transcription
6
3D chromatin structure
6
DNA methylation
Target of assay
33
histone
33
histone modification
broad histone mark
13
narrow histone mark
6
control
Date released
39
June, 2019
14
August, 2017
10
July, 2019
5
March, 2020
3
May, 2019
2
February, 2020
2
May, 2022
1
January, 2018
Available data
52
bigWig
49
bam
44
bed narrowPeak
39
bigBed narrowPeak
38
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
9
tsv
7
tagAlign
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
76
Homo sapiens
Biosample type
66
tissue
10
primary cell
Organ
807
pancreas
749
liver
638
connective tissue
471
adipose tissue
epithelium
339
kidney
333
heart
216
brain
191
vasculature
185
blood vessel
158
bone element
127
artery
88
limb
76
musculature of body
69
blood
69
bodily fluid
61
eye
31
embryo
27
nerve
21
spleen
20
lung
18
ureter
16
skeleton
13
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
76
AMP
Genome assembly (visualization)
57
hg19
45
GRCh38
Lab
76
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
1
audit script error
month_released!
May, 2021
organ_slims!
epithelium
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
76 results
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DNase-seq
ChIP-seq
Hi-C
total RNA-seq
RRBS
small RNA-seq
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
10
1
4
1
1
1
1
muscle of arm
17
muscle of leg
13
3
1
gastrocnemius medialis
4
1
psoas muscle
2
2
1
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primary cell
skeletal muscle satellite cell
4
1
1
skeletal muscle cell
1
2
1
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