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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 356total RNA-seq
  • 214ChIP-seq
  • 136ATAC-seq
  • 80single cell RNA-seq
  • 51WGBS
  • 11snATAC-seq
  • 10MeRIP-seq
  • 9Hi-C
  • 8DNase-seq
  • 2Capture-C
  • 2FAIRE-seq
  • 2RRBS
  • 2small RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1pCHi-C
Assay category
  • 438Transcription
  • 214DNA binding
  • 157DNA accessibility
  • 53DNA methylation
  • 93D chromatin structure
Target of assay
  • 149histone
  • 149histone modification
  • 78broad histone mark
  • 71narrow histone mark
  • 52control
  • 18transcription factor
  • 9RNA binding protein
  • 5nucleotide modification
Date released
  • 188August, 2017
  • 157July, 2018
  • 104May, 2022
  • 72September, 2018
  • May, 2021
  • 56February, 2023
  • 55November, 2019
  • 53October, 2018
  • 39April, 2018
  • 32February, 2021
  • 19September, 2020
  • 18October, 2019
  • 14March, 2020
  • 11September, 2017
  • 10November, 2020
  • 8January, 2021
  • 7August, 2020
  • 7November, 2018
  • 6July, 2019
  • 5March, 2019
  • 5October, 2017
  • 4August, 2021
  • 4June, 2019
  • 3August, 2018
  • 3October, 2022
  • 2May, 2019
  • 1August, 2022
  • 1February, 2020
  • 1June, 2018
Available data
  • 645bam
  • 580bigWig
  • 471fastq
  • 377tsv
  • 211bed narrowPeak
  • 91bigBed narrowPeak
  • 80zippedFastqFolder
  • 29bed bed3+
  • 21bed broadPeak
  • 16tagAlign
  • 7bedpe bed3+
  • 7bigBed broadPeak
  • 7hic
  • 6bed bedMethyl
  • 6bigBed bedMethyl
  • 6txt
  • 3cool
  • 1bedpe
  • 1hdf5
Organism
  • 877Homo sapiens
Biosample type
  • 468tissue
  • 346primary cell
  • 71cell line
Organ
  • 885pancreas
  • 791liver
  • 682connective tissue
  • 498epithelium
  • 491adipose tissue
  • 390heart
  • 354kidney
  • 286brain
  • 236vasculature
  • 230blood vessel
  • 158bone element
  • 141artery
  • 122limb
  • 97musculature of body
  • 69blood
  • 69bodily fluid
  • 61eye
  • 43nerve
  • 35embryo
  • 25spleen
  • 22vein
  • 20lung
  • 18ureter
  • 16skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 1adrenal gland
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1thymus
  • 1urinary bladder
Project
  • 700AMP
  • 152HPAP
  • 33T1D
Genome assembly (visualization)
  • 615hg19
  • 592GRCh38
Lab
  • 665AMP-T2D consortium
  • 152Klaus Kaestner, Upenn
  • 50Kyle Gaulton, UCSD
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 4Bing Ren, UCSD
  • 2Mark McCarthy, Oxford
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 60inconsistent ontology term
  • 4audit script error
Audit category:
  • 54missing controlled_by
Audit category:
  • 9inconsistent control read length
  • 2inconsistent assembly
month_released!
  • May, 2021
BIOSAMPLE
ASSAY

885 results

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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
WGBS
snATAC-seq
MeRIP-seq
Hi-C
DNase-seq
Capture-C
FAIRE-seq
RRBS
small RNA-seq
CRISPR genome editing followed by sgRNA sequencing
pCHi-C
tissue
islet of Langerhans24250586743111
body of pancreas3354242
pancreas1162412111
endocrine pancreas16
primary cell
pancreatic alpha cell52133512311
pancreatic beta cell21132312161
pancreatic acinar cell489121
pancreatic ductal cell413410
pancreatic endocrine cell23
pancreatic delta cell11
pancreatic polypeptide-secreting cell9
pancreatic stellate cell4
co-expressing pancreatic endocrine cell2
unclassified pancreatic endocrine cell2
cell line
EndoC_BH1291436121
Panc11311
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