Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1277total RNA-seq
  • 366single cell RNA-seq
  • 86RNA microarray
  • 18small RNA-seq
  • 10MeRIP-seq
  • 5STARR-seq
  • 3snDrop-seq
Assay category
  • 1661Transcription
Target of assay
  • 5control
  • 5nucleotide modification
Date released
  • 649February, 2021
  • 185August, 2021
  • May, 2021
  • 168July, 2018
  • 145May, 2020
  • 94February, 2023
  • 89August, 2017
  • 60May, 2022
  • 56September, 2020
  • 49April, 2018
  • 49July, 2019
  • 47September, 2023
  • 27September, 2018
  • 26October, 2019
  • 25February, 2020
  • 20November, 2019
  • 15February, 2018
  • 15March, 2020
  • 14November, 2020
  • 10December, 2019
  • 9April, 2020
  • 4May, 2023
  • 3August, 2018
  • 3June, 2018
  • 2October, 2018
  • 1November, 2018
Available data
  • 1305tsv
  • 1162bam
  • 1156bigWig
  • 366fastq
  • 156txt
  • 52zippedFastqFolder
  • 8csv
Organism
  • 1765Homo sapiens
Biosample type
  • 1277tissue
  • 319primary cell
  • 115cell line
  • 54in vitro differentiated cells
Organ
  • 474connective tissue
  • 448pancreas
  • 400adipose tissue
  • 197epithelium
  • 190liver
  • 159heart
  • 146bone element
  • 128kidney
  • 65blood vessel
  • 65vasculature
  • 56artery
  • 21brain
  • 19eye
  • 12embryo
  • 9lung
  • 8musculature of body
  • 4skeleton
  • 3limb
  • 1nerve
  • 1spinal cord
Project
  • 1523AMP
  • 177HPAP
  • 47KPMP
  • 9LungMap
  • 9T1D
Genome assembly (visualization)
  • 1157GRCh38
  • 1157hg19
Lab
  • 1416AMP-T2D consortium
  • 177Klaus Kaestner, Upenn
  • 60Katalin Susztak, Upenn
  • 47KPMP
  • 20Karen Mohlke, UNC
  • 15Bing Ren, UCSD
  • 11Kyle Gaulton, UCSD
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 9Xin Sun, UCSD
Audit category:
  • 157inconsistent ontology term
  • 9audit script error
month_released!
  • May, 2021
BIOSAMPLE
ASSAY

1765 results

search-icontable-tab-icon
Clear Filters
total RNA-seq
single cell RNA-seq
RNA microarray
small RNA-seq
MeRIP-seq
STARR-seq
snDrop-seq
tissue
adipose tissue382
islet of Langerhans25664
liver16711
kidney4964
bone element84
primary cell
Langerhans cell85
pancreatic alpha cell5212
exocrine cell39
pancreatic beta cell2112
pancreatic acinar cell412
cell line
smooth muscle cell of the coronary artery52
EndoC_BH1296
HepG292
H1-hESC8
HEK293T2
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)19
neural progenitor cell7
adipocyte5
cardiomyocytes (cardiac muscle cell)22
pancreatic endoderm4
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego