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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 126total RNA-seq
  • 120ChIP-seq
  • 101ATAC-seq
  • 89single cell RNA-seq
  • 27DNase-seq
  • 24pCHi-C
  • 11small RNA-seq
  • 9Hi-C
  • 5snATAC-seq
  • 4MeRIP-seq
  • 3FAIRE-seq
  • 2Capture-C
  • 2snDrop-seq
Assay category
  • 226Transcription
  • 136DNA accessibility
  • 120DNA binding
  • 93D chromatin structure
Target of assay
  • 83histone
  • 83histone modification
  • 61narrow histone mark
  • 22broad histone mark
  • 22transcription factor
  • 17control
  • 4RNA binding protein
  • 2nucleotide modification
Date released
  • May, 2021
  • 88May, 2020
  • 50October, 2019
  • 48August, 2021
  • 47February, 2023
  • 44July, 2018
  • 39April, 2018
  • 36July, 2019
  • 33August, 2017
  • 32March, 2020
  • 30June, 2019
  • 25February, 2020
  • 11February, 2021
  • 7October, 2017
  • 5March, 2019
  • 4November, 2020
  • 3August, 2018
  • 3December, 2017
  • 3October, 2022
  • 2January, 2021
  • 2May, 2022
  • 2November, 2018
  • 2September, 2017
  • 1April, 2019
  • 1February, 2018
  • 1June, 2018
  • 1March, 2023
  • 1November, 2019
  • 1October, 2018
  • 1September, 2018
Available data
  • 379bam
  • 359bigWig
  • 244tsv
  • 129fastq
  • 127bed narrowPeak
  • 70tagAlign
  • 68bed bed3+
  • 40bigBed narrowPeak
  • 26bed broadPeak
  • 24bigBed broadPeak
  • 8hic
  • 7bedpe bed3+
  • 6bed bed3
  • 5txt
  • 3cool
  • 2csv
  • 1bedpe
  • 1tagAlign bed3+
Organism
  • 523Homo sapiens
Biosample type
  • 240tissue
  • 222primary cell
  • 60in vitro differentiated cells
  • 1stem cell
Organ
  • 138pancreas
  • 79epithelium
  • 71brain
  • 56connective tissue
  • 22heart
  • 19kidney
  • 17adipose tissue
  • 16liver
  • 9musculature of body
  • 8bone element
  • 8skeleton
  • 7blood vessel
  • 7vasculature
  • 4artery
  • 3eye
  • 3limb
  • 2blood
  • 2bodily fluid
  • 2intestine
  • 1adrenal gland
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1lung
  • 1nerve
  • 1ovary
  • 1pericardium
  • 1pituitary gland
  • 1small intestine
  • 1spinal cord
  • 1spleen
  • 1stomach
  • 1thymus
  • 1urinary bladder
  • 1vein
Project
  • 454AMP
  • 65T1D
  • 3HPAP
  • 1ITG
Genome assembly (visualization)
  • 386hg19
  • 323GRCh38
Lab
  • 442AMP-T2D consortium
  • 61Kyle Gaulton, UCSD
  • 4Bing Ren, UCSD
  • 4Rohit N. Kulkarni, M.D., Ph.D.
  • 4Struan F.A. Grant, CHOP
  • 3Klaus Kaestner, Upenn
  • 2Mark McCarthy, Oxford
  • 1ITG
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 33inconsistent ontology term
  • 4audit script error
Audit category:
  • 14missing controlled_by
Audit category:
  • 4inconsistent control read length
month_released!
  • May, 2021
BIOSAMPLE
ASSAY

523 results

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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
pCHi-C
small RNA-seq
Hi-C
snATAC-seq
MeRIP-seq
FAIRE-seq
Capture-C
snDrop-seq
tissue
islet of Langerhans10221861224
liver26111
brain612
heart21411
frontal cortex2211
primary cell
pancreatic alpha cell111
pancreatic beta cell111
pancreatic delta cell10
pancreatic acinar cell81
pancreatic ductal cell9
in vitro differentiated cells
neural progenitor cell72110
adipocyte1741
immature adipocyte11
osteoblast11
preadipocyte11
stem cell
mesenchymal stem cell1
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