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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 450ChIP-seq
Assay category
  • 450DNA binding
Target of assay
  • 877histone modification
  • 876histone
  • 498transcription factor
  • 450narrow histone mark
  • 425broad histone mark
  • 334control
  • 109RNA binding protein
  • 89recombinant protein
  • 36chromatin remodeller
  • 5nucleotide modification
  • 5other context
  • 5other post-translational modification
Date released
  • 141October, 2019
  • 88August, 2017
  • May, 2021
  • 38November, 2017
  • 34May, 2019
  • 27May, 2020
  • 23April, 2019
  • 16December, 2017
  • 15May, 2024
  • 15September, 2018
  • 11August, 2021
  • 11June, 2019
  • 11October, 2018
  • 8February, 2018
  • 4November, 2019
  • 3January, 2019
  • 3March, 2020
  • 2October, 2017
Available data
  • 388bigWig
  • 377bed narrowPeak
  • 363bam
  • 149bigBed narrowPeak
  • 133tagAlign
  • 110fastq
  • 29bed broadPeak
  • 14bigBed broadPeak
  • 13bed bed3+
  • 1tagAlign bed3+
Organism
  • 448Homo sapiens
Biosample type
  • 324tissue
  • 63primary cell
  • 44in vitro differentiated cells
  • 18cell line
  • 1stem cell
Organ
  • 117brain
  • 71pancreas
  • 60liver
  • 47epithelium
  • 40heart
  • 33connective tissue
  • 26vasculature
  • 25blood vessel
  • 15kidney
  • 15limb
  • 13musculature of body
  • 12adipose tissue
  • 8embryo
  • 8nerve
  • 6artery
  • 6vein
  • 4gonad
  • 4ovary
  • 3eye
  • 2spleen
  • 1blood
  • 1bodily fluid
  • 1lymph node
  • 1pituitary gland
Project
  • 447AMP
  • 3T1D
Genome assembly (visualization)
  • 368GRCh38
  • 359hg19
Lab
  • 433AMP-T2D consortium
  • 15Patrick T. Ellinor, Broad
  • 2Bing Ren, UCSD
Audit category:
  • 18inconsistent ontology term
Audit category:
  • 29missing controlled_by
Audit category:
  • 16inconsistent control read length
  • 1inconsistent assembly
  • 1inconsistent control run_type
month_released!
  • May, 2021
BIOSAMPLE
ASSAY

450 results

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Clear Filters
ChIP-seq
tissue
liver42
islet of Langerhans37
left cardiac atrium15
subcutaneous abdominal adipose tissue11
kidney10
primary cell
pancreatic endocrine cell12
pancreatic ductal cell7
endothelial cell of umbilical vein6
skeletal muscle myoblast6
epithelial cell of proximal tubule4
in vitro differentiated cells
adipocyte16
neural progenitor cell7
pancreatic endoderm6
hepatocyte5
Hepatic endoderm2
cell line
HepG29
EndoC_BH15
Panc13
GM128781
stem cell
hESC1
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