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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
254
ChIP-seq
65
DNase-seq
23
total RNA-seq
9
Hi-C
7
RRBS
6
small RNA-seq
5
ATAC-seq
3
pCHi-C
3
single cell RNA-seq
1
FAIRE-seq
1
WGBS
Assay category
254
DNA binding
71
DNA accessibility
32
Transcription
9
3D chromatin structure
8
DNA methylation
Target of assay
220
histone
220
histone modification
130
narrow histone mark
90
broad histone mark
37
control
RNA binding protein
3
transcription factor
Date released
88
November, 2017
86
October, 2019
73
June, 2019
35
May, 2019
28
July, 2019
26
August, 2017
16
October, 2017
14
February, 2020
7
March, 2020
May, 2022
2
November, 2018
1
February, 2023
1
January, 2018
Available data
297
bam
287
bigWig
260
bed narrowPeak
171
bigBed narrowPeak
133
tagAlign
90
bed broadPeak
68
bed bed3+
68
bigBed broadPeak
35
tsv
20
fastq
6
bed bedMethyl
6
bigBed bedMethyl
3
hdf5
2
bedpe bed3+
2
hic
1
bed bed3
1
tagAlign bed3+
Organism
377
Homo sapiens
Biosample type
345
tissue
32
primary cell
Organ
833
pancreas
693
liver
674
connective tissue
486
adipose tissue
436
epithelium
382
heart
351
kidney
283
brain
231
vasculature
226
blood vessel
159
bone element
140
artery
122
limb
94
musculature of body
60
eye
59
blood
59
bodily fluid
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
377
AMP
Genome assembly (visualization)
267
GRCh38
233
hg19
Lab
377
AMP-T2D consortium
Audit category:
12
inconsistent ontology term
Audit category:
4
missing controlled_by
month_released!
May, 2022
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
377 results
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ChIP-seq
DNase-seq
total RNA-seq
Hi-C
RRBS
small RNA-seq
ATAC-seq
pCHi-C
single cell RNA-seq
FAIRE-seq
WGBS
tissue
brain
20
14
1
1
1
skeletal muscle tissue
22
1
4
1
1
layer of hippocampus
23
muscle of leg
7
13
1
caudate nucleus
15
1
1
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primary cell
skeletal muscle satellite cell
8
1
1
astrocyte of the cerebellum
2
1
1
brain microvascular endothelial cell
2
1
1
choroid plexus epithelial cell
2
1
1
skeletal muscle cell
2
1
1
+ See 4 more…
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