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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
132
ChIP-seq
33
DNase-seq
17
total RNA-seq
4
small RNA-seq
3
ATAC-seq
3
Hi-C
3
pCHi-C
3
single cell RNA-seq
2
RRBS
2
WGBS
1
FAIRE-seq
Assay category
132
DNA binding
37
DNA accessibility
24
Transcription
4
DNA methylation
3
3D chromatin structure
Target of assay
108
histone
108
histone modification
86
narrow histone mark
22
broad histone mark
21
control
6
transcription factor
3
other context
3
other post-translational modification
Date released
November, 2017
86
October, 2019
30
June, 2019
28
May, 2019
18
July, 2019
October, 2017
12
February, 2020
11
November, 2018
7
December, 2018
7
January, 2019
3
March, 2020
1
February, 2023
Available data
179
bam
164
bigWig
146
bed narrowPeak
71
bigBed narrowPeak
38
tagAlign
36
bed bed3+
33
bed broadPeak
33
bigBed broadPeak
27
tsv
25
fastq
4
bed bedMethyl
4
bigBed bedMethyl
3
hdf5
1
bed bed3
1
tagAlign bed3+
Organism
203
Homo sapiens
Biosample type
191
tissue
12
primary cell
Organ
941
pancreas
683
connective tissue
518
epithelium
490
adipose tissue
476
liver
393
heart
354
kidney
230
vasculature
227
blood vessel
179
brain
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
24
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
203
AMP
Genome assembly (visualization)
162
GRCh38
156
hg19
Lab
203
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
month_released!
November, 2017
October, 2017
BIOSAMPLE
ASSAY
203 results
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ChIP-seq
DNase-seq
total RNA-seq
small RNA-seq
ATAC-seq
Hi-C
pCHi-C
single cell RNA-seq
RRBS
WGBS
FAIRE-seq
tissue
spleen
20
1
1
2
brain
5
14
1
1
1
temporal lobe
15
1
1
angular gyrus
15
frontal cortex
2
2
1
1
+ See 76 more…
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
brain pericyte
1
1
cerebellar granule cell
2
choroid plexus epithelial cell
1
1
+ See 2 more…
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