Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
144
ChIP-seq
34
DNase-seq
17
total RNA-seq
5
Hi-C
4
ATAC-seq
4
small RNA-seq
3
single cell RNA-seq
2
FAIRE-seq
2
RRBS
2
pCHi-C
Assay category
144
DNA binding
40
DNA accessibility
24
Transcription
5
3D chromatin structure
2
DNA methylation
Target of assay
129
histone
129
histone modification
92
narrow histone mark
37
broad histone mark
18
control
Date released
107
October, 2019
November, 2017
30
June, 2019
28
May, 2019
18
July, 2019
16
October, 2017
12
February, 2020
3
March, 2020
2
November, 2018
1
February, 2023
Available data
185
bam
171
bigWig
152
bed narrowPeak
77
bigBed narrowPeak
52
tagAlign
39
bed broadPeak
37
bed bed3+
36
bigBed broadPeak
26
tsv
12
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
2
hic
1
bed bed3
1
bedpe bed3+
1
tagAlign bed3+
1
tar
Organism
217
Homo sapiens
Biosample type
183
tissue
34
primary cell
Organ
946
pancreas
684
connective tissue
518
epithelium
491
adipose tissue
476
liver
393
heart
354
kidney
230
vasculature
227
blood vessel
195
brain
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
217
AMP
Genome assembly (visualization)
166
GRCh38
166
hg19
Lab
217
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
1
audit script error
Audit category:
4
missing controlled_by
month_released!
November, 2017
organ_slims!
mammary gland
BIOSAMPLE
ASSAY
217 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
DNase-seq
total RNA-seq
Hi-C
ATAC-seq
small RNA-seq
single cell RNA-seq
FAIRE-seq
RRBS
pCHi-C
tissue
brain
20
14
1
1
1
temporal lobe
15
1
1
angular gyrus
15
cerebellum (Hemisphere)
2
1
1
1
1
frontal cortex
2
2
1
1
+ See 75 more…
primary cell
endothelial cell of umbilical vein
17
2
2
1
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
brain pericyte
1
1
cerebellar granule cell
2
+ See 3 more…
See all biosamples
Download