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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 127ChIP-seq
  • 32DNase-seq
  • 17total RNA-seq
  • 4ATAC-seq
  • 4small RNA-seq
  • 3Hi-C
  • 3single cell RNA-seq
  • 2RRBS
  • 2pCHi-C
  • 1FAIRE-seq
Assay category
  • 127DNA binding
  • 37DNA accessibility
  • 24Transcription
  • 33D chromatin structure
  • 2DNA methylation
Target of assay
  • 114histone
  • 114histone modification
  • 86narrow histone mark
  • 28broad histone mark
  • 16control
Date released
  • November, 2017
  • 86October, 2019
  • 30June, 2019
  • 28May, 2019
  • 18July, 2019
  • 16October, 2017
  • 12February, 2020
  • 2March, 2020
  • 2November, 2018
  • 1February, 2023
Available data
  • 165bam
  • 156bigWig
  • 139bed narrowPeak
  • 64bigBed narrowPeak
  • 52tagAlign
  • 35bed bed3+
  • 35bed broadPeak
  • 32bigBed broadPeak
  • 26tsv
  • 12fastq
  • 3hdf5
  • 2bed bedMethyl
  • 2bigBed bedMethyl
  • 1bed bed3
  • 1tagAlign bed3+
Organism
  • 195Homo sapiens
Biosample type
  • 183tissue
  • 12primary cell
Organ
  • 946pancreas
  • 684connective tissue
  • 518epithelium
  • 491adipose tissue
  • 476liver
  • 393heart
  • 354kidney
  • 230vasculature
  • 227blood vessel
  • 195brain
  • 159bone element
  • 141artery
  • 122limb
  • 96musculature of body
  • 69blood
  • 69bodily fluid
  • 61eye
  • 43nerve
  • 37embryo
  • 25spleen
  • 22vein
  • 20lung
  • 18ureter
  • 16skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 195AMP
Genome assembly (visualization)
  • 154GRCh38
  • 149hg19
Lab
  • 195AMP-T2D consortium
Audit category:
  • 3inconsistent ontology term
Audit category:
  • 4missing controlled_by
month_released!
  • November, 2017
BIOSAMPLE
ASSAY

195 results

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Clear Filters
ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
pCHi-C
FAIRE-seq
tissue
brain2014111
temporal lobe1511
angular gyrus15
cerebellum (Hemisphere)21111
frontal cortex2211
primary cell
astrocyte of the cerebellum11
brain microvascular endothelial cell11
brain pericyte11
cerebellar granule cell2
choroid plexus epithelial cell11
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