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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
184
total RNA-seq
146
ChIP-seq
22
ATAC-seq
5
DNase-seq
5
WGBS
3
Hi-C
3
pCHi-C
3
small RNA-seq
2
STARR-seq
1
RRBS
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
188
Transcription
146
DNA binding
27
DNA accessibility
6
DNA methylation
3
3D chromatin structure
1
DNA sequencing
Target of assay
95
transcription factor
73
histone modification
histone
50
control
46
narrow histone mark
26
broad histone mark
22
RNA binding protein
16
recombinant protein
7
chromatin remodeller
Date released
November, 2017
167
May, 2020
53
November, 2018
43
December, 2017
40
May, 2022
28
August, 2021
22
August, 2017
8
July, 2019
5
January, 2019
3
February, 2021
3
March, 2020
1
December, 2018
1
February, 2020
1
June, 2019
1
October, 2019
Available data
292
bam
278
bigWig
169
tsv
121
bed narrowPeak
118
fastq
84
bigBed narrowPeak
26
tagAlign
8
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
bed bed3
1
csv
1
vcf
Organism
376
Homo sapiens
Biosample type
292
tissue
83
cell line
1
primary cell
Organ
795
pancreas
606
connective tissue
459
adipose tissue
epithelium
389
liver
324
kidney
296
heart
161
vasculature
159
bone element
158
blood vessel
121
artery
81
brain
73
limb
68
blood
68
bodily fluid
63
musculature of body
58
eye
25
embryo
20
lung
19
nerve
19
spleen
18
ureter
16
skeleton
7
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
376
AMP
Genome assembly (visualization)
281
hg19
249
GRCh38
Lab
308
AMP-T2D consortium
40
Karen Mohlke, UNC
28
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent replicate
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
month_released!
November, 2017
organ_slims!
epithelium
pituitary gland
target.investigated_as!
histone
BIOSAMPLE
ASSAY
376 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
STARR-seq
RRBS
single cell RNA-seq
whole genome sequencing assay
tissue
liver
167
81
20
2
3
1
1
1
1
1
right lobe of liver
3
5
1
2
1
2
cell line
HepG2
14
60
1
1
2
2
2
1
primary cell
hepatic stellate cell
1
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