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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 264ChIP-seq
  • 5MeRIP-seq
  • 3single cell RNA-seq
Assay category
  • 264DNA binding
  • 3Transcription
Target of assay
  • 929histone modification
  • 928histone
  • 476narrow histone mark
  • 451broad histone mark
  • 272control
  • 270transcription factor
  • 77RNA binding protein
  • 23recombinant protein
  • 21chromatin remodeller
  • 5nucleotide modification
  • 3other context
  • 3other post-translational modification
Date released
  • November, 2017
  • 50August, 2017
  • 39October, 2019
  • 29October, 2018
  • 23May, 2019
  • 23May, 2020
  • 21December, 2017
  • 14April, 2019
  • 12August, 2021
  • 9May, 2021
  • 8February, 2018
  • 8June, 2019
  • 6November, 2018
  • 6September, 2017
  • 5November, 2020
  • 4December, 2018
  • 4January, 2019
  • 3February, 2021
  • 3July, 2019
  • 3October, 2017
  • 2November, 2019
Available data
  • 235bam
  • 109fastq
  • 57tagAlign
  • 9bed bed3+
  • 7bigWig
  • 3tsv
Organism
  • 271Homo sapiens
Biosample type
  • 175tissue
  • 37in vitro differentiated cells
  • 32primary cell
  • 27cell line
  • 1stem cell
Organ
  • 53pancreas
  • 52liver
  • 35connective tissue
  • 28epithelium
  • 24adipose tissue
  • 20blood vessel
  • 20heart
  • 20vasculature
  • 17limb
  • 16brain
  • 12kidney
  • 11nerve
  • 9artery
  • 8spleen
  • 7embryo
  • 6blood
  • 6bodily fluid
  • 6musculature of body
  • 2vein
  • 1eye
Project
  • 272AMP
Genome assembly (visualization)
  • 16hg19
  • 12GRCh38
Lab
  • 255AMP-T2D consortium
  • 8Kyle Gaulton, UCSD
  • 5Rohit N. Kulkarni, M.D., Ph.D.
  • 4Bing Ren, UCSD
Audit category:
  • 15inconsistent ontology term
month_released!
  • November, 2017
BIOSAMPLE
ASSAY

272 results

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Clear Filters
ChIP-seq
MeRIP-seq
single cell RNA-seq
tissue
liver43
islet of Langerhans132
tibial nerve11
subcutaneous adipose tissue10
body of pancreas9
in vitro differentiated cells
adipocyte8
neural progenitor cell7
embryonic stem cell6
pancreatic endoderm5
Hepatic endoderm2
primary cell
pancreatic alpha cell6
pancreatic beta cell6
CD8-positive, alpha-beta T cell3
cardiac fibroblast2
cerebellar granule cell2
cell line
GM128786
Panc16
EndoC_BH123
HepG24
smooth muscle cell of the coronary artery2
stem cell
hESC1
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