Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 270ChIP-seq
Assay category
  • 270DNA binding
Target of assay
  • 929histone modification
  • 928histone
  • 476narrow histone mark
  • 451broad histone mark
  • 272control
  • 270transcription factor
  • 77RNA binding protein
  • 23recombinant protein
  • 21chromatin remodeller
  • 5nucleotide modification
  • 3other context
  • 3other post-translational modification
Date released
  • November, 2017
  • 64November, 2018
  • 47August, 2017
  • 42December, 2017
  • 28December, 2018
  • 16May, 2021
  • 15October, 2018
  • 14January, 2019
  • 11August, 2021
  • 7October, 2019
  • 6April, 2019
  • 5February, 2021
  • 5May, 2019
  • 5May, 2024
  • 4June, 2019
  • 1November, 2019
Available data
  • 256bigWig
  • 242bam
  • 233bed narrowPeak
  • 210fastq
  • 169bigBed narrowPeak
  • 19bed bed3+
  • 9tagAlign
  • 2bed broadPeak
  • 2bigBed broadPeak
Organism
  • 270Homo sapiens
Biosample type
  • 120cell line
  • 94tissue
  • 49in vitro differentiated cells
  • 7primary cell
Organ
  • 97liver
  • 51blood
  • 51bodily fluid
  • 40connective tissue
  • 19pancreas
  • 17adipose tissue
  • 17heart
  • 10kidney
  • 7blood vessel
  • 7epithelium
  • 7vasculature
  • 6spleen
  • 5artery
  • 3embryo
  • 1eye
Project
  • 270AMP
Genome assembly (visualization)
  • 249hg19
  • 244GRCh38
Lab
  • 242AMP-T2D consortium
  • 12Kyle Gaulton, UCSD
  • 11Bing Ren, UCSD
  • 5Patrick T. Ellinor, Broad
Audit category:
  • 28inconsistent control
  • 14inconsistent ontology term
Audit category:
  • 26missing controlled_by
Audit category:
  • 15inconsistent control read length
  • 4inconsistent control run_type
month_released!
  • November, 2017
BIOSAMPLE
ASSAY

270 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
cell line
HepG256
GM1287851
smooth muscle cell of the coronary artery4
RCC 7860 HIF1a re-expression3
RCC 7860 HIF2a over-expression2
tissue
liver37
white adipose tissue12
body of pancreas9
islet of Langerhans7
spleen6
in vitro differentiated cells
adipocyte22
embryonic stem cell12
cardiomyocytes3
pancreatic endoderm3
Posterior foregut2
primary cell
skeletal muscle myoblast2
cardiac fibroblast1
cardiac muscle cell1
epithelial cell of proximal tubule1
kidney epithelial cell1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego