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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
403
total RNA-seq
77
ChIP-seq
18
ATAC-seq
6
WGBS
3
pCHi-C
3
small RNA-seq
1
DNase-seq
1
RNA microarray
Assay category
406
Transcription
77
DNA binding
19
DNA accessibility
6
DNA methylation
Target of assay
36
histone
36
histone modification
24
control
20
broad histone mark
17
transcription factor
16
narrow histone mark
5
RNA binding protein
Date released
394
February, 2021
57
August, 2017
23
October, 2018
12
July, 2019
9
February, 2023
5
October, 2019
3
February, 2020
2
March, 2020
1
August, 2018
1
August, 2021
1
January, 2018
1
June, 2019
1
May, 2023
November, 2018
1
November, 2019
1
October, 2017
Available data
449
bam
424
bigWig
403
tsv
43
fastq
20
bed narrowPeak
9
bigBed narrowPeak
8
tagAlign
5
bed bed3+
4
bed bed3
4
txt
2
bed bedMethyl
2
bed broadPeak
2
bigBed bedMethyl
1
bedpe bed3+
1
bigBed broadPeak
Organism
511
Homo sapiens
Biosample type
509
tissue
2
primary cell
1
in vitro differentiated cells
Organ
939
pancreas
738
liver
683
connective tissue
524
epithelium
490
adipose tissue
393
heart
354
kidney
284
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
61
eye
54
blood
54
bodily fluid
43
nerve
37
embryo
22
vein
20
lung
18
ureter
16
skeleton
16
spleen
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
512
AMP
Genome assembly (visualization)
437
hg19
431
GRCh38
Lab
512
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
month_released!
November, 2018
BIOSAMPLE
ASSAY
512 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
pCHi-C
small RNA-seq
DNase-seq
RNA microarray
tissue
adipose tissue
382
2
3
3
1
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
12
1
1
1
omental fat pad
5
11
1
1
1
white adipose tissue
12
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primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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