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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
45
ChIP-seq
18
snATAC-seq
9
single cell RNA-seq
1
ATAC-seq
1
pCHi-C
Assay category
45
DNA binding
19
DNA accessibility
9
Transcription
Target of assay
39
transcription factor
8
RNA binding protein
8
chromatin remodeller
3
control
1
histone
1
histone modification
1
narrow histone mark
Date released
27
December, 2018
19
April, 2020
18
January, 2019
November, 2018
8
January, 2021
1
January, 2018
1
March, 2020
Available data
45
bam
45
fastq
43
bigWig
42
bed narrowPeak
42
bigBed narrowPeak
1
tsv
Organism
73
Homo sapiens
Biosample type
46
cell line
20
tissue
8
primary cell
Organ
939
pancreas
738
liver
683
connective tissue
524
epithelium
490
adipose tissue
393
heart
354
kidney
284
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
61
eye
54
blood
54
bodily fluid
43
nerve
37
embryo
22
vein
20
lung
18
ureter
16
skeleton
16
spleen
5
gonad
5
ovary
2
intestine
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
47
AMP
19
LungMap
8
T1D
Genome assembly (visualization)
43
hg19
42
GRCh38
Lab
47
AMP-T2D consortium
19
Xin Sun, UCSD
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
month_released!
November, 2018
organ_slims!
pericardium
BIOSAMPLE
ASSAY
74 results
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ChIP-seq
snATAC-seq
single cell RNA-seq
ATAC-seq
pCHi-C
cell line
GM12878
45
1
tissue
lung
10
9
1
primary cell
peripheral blood mononuclear cell
8
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