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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
42
ChIP-seq
18
snATAC-seq
9
single cell RNA-seq
1
ATAC-seq
1
pCHi-C
Assay category
42
DNA binding
19
DNA accessibility
9
Transcription
Target of assay
39
transcription factor
8
RNA binding protein
8
chromatin remodeller
control
1
histone
1
histone modification
1
narrow histone mark
Date released
27
December, 2018
19
April, 2020
15
January, 2019
November, 2018
8
January, 2021
1
January, 2018
1
March, 2020
Available data
43
bigWig
42
bam
42
bed narrowPeak
42
bigBed narrowPeak
42
fastq
1
tsv
Organism
70
Homo sapiens
Biosample type
43
cell line
20
tissue
8
primary cell
Organ
886
pancreas
648
connective tissue
630
liver
494
epithelium
466
adipose tissue
373
heart
342
kidney
253
brain
214
vasculature
209
blood vessel
159
bone element
132
artery
105
limb
90
musculature of body
60
eye
51
blood
51
bodily fluid
32
nerve
30
embryo
20
lung
20
vein
18
ureter
16
skeleton
11
spleen
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
urinary bladder
Project
44
AMP
19
LungMap
8
T1D
Genome assembly (visualization)
43
hg19
42
GRCh38
Lab
44
AMP-T2D consortium
19
Xin Sun, UCSD
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
month_released!
November, 2018
organ_slims!
urinary bladder
target.investigated_as!
control
BIOSAMPLE
ASSAY
71 results
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ChIP-seq
snATAC-seq
single cell RNA-seq
ATAC-seq
pCHi-C
cell line
GM12878
42
1
tissue
lung
10
9
1
primary cell
peripheral blood mononuclear cell
8
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