Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
80
ChIP-seq
8
snATAC-seq
5
total RNA-seq
2
ATAC-seq
2
DNase-seq
Assay category
80
DNA binding
12
DNA accessibility
5
Transcription
Target of assay
39
transcription factor
25
histone
25
histone modification
16
broad histone mark
14
control
9
narrow histone mark
8
RNA binding protein
8
chromatin remodeller
Date released
42
October, 2019
27
December, 2018
18
January, 2019
November, 2018
8
January, 2021
1
February, 2020
1
January, 2018
Available data
87
bam
74
bigWig
69
bed narrowPeak
68
bigBed narrowPeak
45
fastq
5
tsv
2
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
Organism
97
Homo sapiens
Biosample type
46
cell line
43
tissue
8
primary cell
Organ
939
pancreas
738
liver
683
connective tissue
524
epithelium
490
adipose tissue
393
heart
354
kidney
284
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
61
eye
54
blood
54
bodily fluid
43
nerve
37
embryo
22
vein
20
lung
18
ureter
16
skeleton
16
spleen
5
gonad
5
ovary
2
intestine
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
89
AMP
8
T1D
Genome assembly (visualization)
74
hg19
73
GRCh38
Lab
89
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
month_released!
November, 2018
organ_slims!
pericardium
BIOSAMPLE
ASSAY
97 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
snATAC-seq
total RNA-seq
ATAC-seq
DNase-seq
cell line
GM12878
45
1
tissue
tibial nerve
35
5
1
2
primary cell
peripheral blood mononuclear cell
8
Download