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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
51
ChIP-seq
8
snATAC-seq
2
ATAC-seq
1
pCHi-C
Assay category
51
DNA binding
10
DNA accessibility
Target of assay
42
transcription factor
8
RNA binding protein
8
chromatin remodeller
control
7
histone
7
histone modification
4
broad histone mark
3
narrow histone mark
Date released
30
December, 2018
21
January, 2019
November, 2018
8
January, 2021
1
January, 2018
1
March, 2020
1
October, 2017
Available data
53
bigWig
52
bam
52
bed narrowPeak
52
fastq
51
bigBed narrowPeak
1
tsv
Organism
62
Homo sapiens
Biosample type
43
cell line
11
tissue
8
primary cell
Organ
886
pancreas
648
connective tissue
630
liver
494
epithelium
466
adipose tissue
373
heart
342
kidney
253
brain
214
vasculature
209
blood vessel
159
bone element
132
artery
105
limb
90
musculature of body
60
eye
51
blood
51
bodily fluid
32
nerve
30
embryo
20
lung
20
vein
18
ureter
16
skeleton
11
spleen
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
54
AMP
8
T1D
Genome assembly (visualization)
53
hg19
52
GRCh38
Lab
54
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
month_released!
November, 2018
organ_slims!
mammary gland
target.investigated_as!
control
BIOSAMPLE
ASSAY
62 results
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ChIP-seq
snATAC-seq
ATAC-seq
pCHi-C
cell line
GM12878
42
1
tissue
spleen
9
1
1
primary cell
peripheral blood mononuclear cell
8
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