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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 503ChIP-seq
  • 189total RNA-seq
  • 23ATAC-seq
  • 4Hi-C
  • 4WGBS
  • 3DNase-seq
  • 3pCHi-C
  • 3small RNA-seq
  • 2RRBS
  • 2STARR-seq
  • 1single cell RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 503DNA binding
  • 193Transcription
  • 26DNA accessibility
  • 6DNA methylation
  • 43D chromatin structure
  • 1DNA sequencing
Target of assay
  • 289transcription factor
  • 108control
  • 103histone modification
  • 102histone
  • 66recombinant protein
  • 60narrow histone mark
  • 42broad histone mark
  • 39RNA binding protein
  • 18chromatin remodeller
  • 2other context
  • 2other post-translational modification
Date released
  • 315November, 2017
  • 194May, 2020
  • 63December, 2017
  • 54August, 2017
  • November, 2018
  • 40May, 2022
  • 35August, 2021
  • 10July, 2019
  • 7October, 2019
  • 5December, 2019
  • 5January, 2019
  • 3February, 2021
  • 3March, 2020
  • 2June, 2019
  • 1December, 2018
  • 1February, 2020
Available data
  • 628bam
  • 570bigWig
  • 412fastq
  • 390bed narrowPeak
  • 307bigBed narrowPeak
  • 174tsv
  • 86tagAlign
  • 60bed broadPeak
  • 60bigBed broadPeak
  • 10bed bed3+
  • 3tar
  • 2bed bedMethyl
  • 2bedpe bed3+
  • 2bigBed bedMethyl
  • 2hic
  • 1bed bed3
  • 1csv
  • 1hdf5
  • 1vcf
Organism
  • 738Homo sapiens
Biosample type
  • 355cell line
  • 354tissue
  • 15in vitro differentiated cells
  • 14primary cell
Organ
  • 939pancreas
  • 738liver
  • 683connective tissue
  • 524epithelium
  • 490adipose tissue
  • 393heart
  • 354kidney
  • 284brain
  • 236vasculature
  • 230blood vessel
  • 159bone element
  • 141artery
  • 122limb
  • 96musculature of body
  • 61eye
  • 54blood
  • 54bodily fluid
  • 43nerve
  • 37embryo
  • 22vein
  • 20lung
  • 18ureter
  • 16skeleton
  • 16spleen
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 738AMP
Genome assembly (visualization)
  • 576hg19
  • 479GRCh38
Lab
  • 667AMP-T2D consortium
  • 40Karen Mohlke, UNC
  • 31Bing Ren, UCSD
Audit category:
  • 27inconsistent control
  • 1inconsistent ontology term
  • 1inconsistent replicate
Audit category:
  • 10missing controlled_by
Audit category:
  • 22inconsistent control read length
  • 4inconsistent control run_type
month_released!
  • November, 2018
BIOSAMPLE
ASSAY

738 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
Hi-C
WGBS
DNase-seq
pCHi-C
small RNA-seq
RRBS
STARR-seq
single cell RNA-seq
whole genome sequencing assay
cell line
HepG23331412221
tissue
liver14116720131111
right lobe of liver1031112
in vitro differentiated cells
hepatocyte15
primary cell
hepatocyte4511
Liver fetal (hepatocyte)1
endothelial cell of hepatic sinusoid1
hepatic stellate cell1
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