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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 694ChIP-seq
  • 241total RNA-seq
  • 195ATAC-seq
  • 95single cell RNA-seq
  • 49pCHi-C
  • 48DNase-seq
  • 19Hi-C
  • 19RRBS
  • 12snATAC-seq
  • 11small RNA-seq
  • 10MeRIP-seq
  • 7WGBS
  • 4STARR-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 3FAIRE-seq
  • 2Capture-C
  • 2snDrop-seq
  • 1DNAme array
Assay category
  • 694DNA binding
  • 347Transcription
  • 258DNA accessibility
  • 27DNA methylation
  • 193D chromatin structure
Target of assay
  • 362transcription factor
  • 261histone
  • 261histone modification
  • 153narrow histone mark
  • 108broad histone mark
  • 74control
  • 73recombinant protein
  • 62RNA binding protein
  • 27chromatin remodeller
  • 5nucleotide modification
  • 2other context
  • 2other post-translational modification
Date released
  • 295November, 2017
  • 148May, 2021
  • 144May, 2020
  • 124October, 2019
  • 66August, 2021
  • November, 2018
  • 62December, 2017
  • 62June, 2019
  • 60July, 2019
  • 56August, 2017
  • 53February, 2023
  • 48March, 2020
  • 45July, 2018
  • 43February, 2021
  • 39April, 2018
  • 28December, 2018
  • 25February, 2020
  • 24November, 2019
  • 21January, 2019
  • 14May, 2019
  • 10November, 2020
  • 8October, 2018
  • 7December, 2019
  • 7October, 2017
  • 5January, 2021
  • 5March, 2019
  • 3August, 2018
  • 3October, 2022
  • 2April, 2019
  • 2May, 2022
  • 2September, 2017
  • 1February, 2018
  • 1June, 2018
  • 1March, 2023
  • 1September, 2018
Available data
  • 1095bam
  • 1017bigWig
  • 668bed narrowPeak
  • 566fastq
  • 469bigBed narrowPeak
  • 371tsv
  • 142tagAlign
  • 124bed broadPeak
  • 122bigBed broadPeak
  • 106bed bed3+
  • 19bed bedMethyl
  • 19bigBed bedMethyl
  • 13bedpe bed3+
  • 12hic
  • 8txt
  • 7bed bed3
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2csv
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
Organism
  • 1415Homo sapiens
Biosample type
  • 476primary cell
  • 405cell line
  • 347tissue
  • 183in vitro differentiated cells
  • 4stem cell
Organ
  • 376liver
  • 200pancreas
  • 169epithelium
  • 96brain
  • 68connective tissue
  • 58kidney
  • 49vasculature
  • 45blood
  • 45bodily fluid
  • 44blood vessel
  • 41heart
  • 22musculature of body
  • 19vein
  • 17adipose tissue
  • 13embryo
  • 11artery
  • 9bone element
  • 8limb
  • 8skeleton
  • 7eye
  • 2intestine
  • 2pericardium
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1lung
  • 1mammary gland
  • 1nerve
  • 1ovary
  • 1pituitary gland
  • 1small intestine
  • 1spinal cord
  • 1spleen
  • 1stomach
  • 1urinary bladder
Project
  • 1244AMP
  • 161T1D
  • 9HPAP
  • 1ITG
Genome assembly (visualization)
  • 1100hg19
  • 944GRCh38
Lab
  • 1197AMP-T2D consortium
  • 173Kyle Gaulton, UCSD
  • 10Bing Ren, UCSD
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 9Klaus Kaestner, Upenn
  • 7Struan F.A. Grant, CHOP
  • 4Katalin Susztak, Upenn
  • 2Mark McCarthy, Oxford
  • 1ITG
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 134inconsistent ontology term
  • 28inconsistent control
  • 6audit script error
  • 1inconsistent replicate
Audit category:
  • 24missing controlled_by
Audit category:
  • 33inconsistent control read length
  • 5inconsistent control run_type
  • 3inconsistent assembly
month_released!
  • November, 2018
replication_type!
  • unreplicated
BIOSAMPLE
ASSAY

1415 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
pCHi-C
DNase-seq
Hi-C
RRBS
snATAC-seq
small RNA-seq
MeRIP-seq
WGBS
STARR-seq
CRISPR genome editing followed by DNA sequencing
FAIRE-seq
Capture-C
snDrop-seq
DNAme array
primary cell
monocyte4726211
naive thymus-derived CD4-positive, alpha-beta T cell21221
CD4-positive, alpha-beta memory T cell22
endothelial cell of umbilical vein16111
skeletal muscle myoblast15121
cell line
HepG229151212
GM1287843
EndoC_BH122263
Panc11111
H1-hESC8
tissue
islet of Langerhans221037612134
liver383111
brain111121
heart531411
kidney12141
in vitro differentiated cells
neural progenitor cell21710
embryonic stem cell11551
cardiac precursors (cardiac muscle cell)1911
adipocyte71811
hepatocyte15
stem cell
hESC3
mesenchymal stem cell1
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