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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
ChIP-seq
Assay category
84
DNA binding
Target of assay
83
histone
83
histone modification
45
narrow histone mark
38
broad histone mark
28
control
8
transcription factor
RNA binding protein
3
nucleotide modification
1
chromatin remodeller
Date released
21
October, 2019
21
September, 2018
14
August, 2017
14
December, 2017
November, 2019
3
August, 2021
3
May, 2019
3
May, 2021
2
June, 2019
2
November, 2017
1
March, 2020
Available data
84
bam
81
bigWig
79
bed narrowPeak
51
fastq
29
bigBed narrowPeak
5
tagAlign
4
bed broadPeak
4
bigBed broadPeak
3
bed bed3+
Organism
84
Homo sapiens
Biosample type
66
primary cell
16
in vitro differentiated cells
2
cell line
Organ
385
liver
187
brain
151
pancreas
108
connective tissue
103
heart
84
epithelium
75
vasculature
74
blood vessel
49
limb
44
adipose tissue
44
blood
44
bodily fluid
37
kidney
33
musculature of body
24
artery
24
nerve
15
embryo
15
vein
12
spleen
4
gonad
4
ovary
3
eye
1
lymph node
1
pituitary gland
Project
82
AMP
2
T1D
Genome assembly (visualization)
81
hg19
79
GRCh38
Lab
84
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
Audit category:
21
missing controlled_by
Audit category:
5
inconsistent control read length
month_released!
November, 2019
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
84 results
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Clear Filters
ChIP-seq
primary cell
endothelial cell of umbilical vein
15
pancreatic ductal cell
13
pancreatic acinar cell
8
epithelial cell of proximal tubule
7
pancreatic alpha cell
7
+ See 6 more…
in vitro differentiated cells
hepatocyte
12
Hepatic endoderm
2
pancreatic PP cell
2
cell line
EndoC_BH1
2
See all biosamples
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