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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 377total RNA-seq
  • 205ChIP-seq
  • 132ATAC-seq
  • 80single cell RNA-seq
  • 51WGBS
  • 11snATAC-seq
  • 10MeRIP-seq
  • 8DNase-seq
  • 7Hi-C
  • 2Capture-C
  • 2FAIRE-seq
  • 2RRBS
  • 2small RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1pCHi-C
Assay category
  • 459Transcription
  • 205DNA binding
  • 153DNA accessibility
  • 53DNA methylation
  • 73D chromatin structure
Target of assay
  • 141histone
  • 141histone modification
  • 72broad histone mark
  • 69narrow histone mark
  • 51control
  • 18transcription factor
  • 8RNA binding protein
  • 5nucleotide modification
Date released
  • 188August, 2017
  • 157July, 2018
  • 104May, 2022
  • 72September, 2018
  • 61May, 2021
  • 56February, 2023
  • November, 2019
  • 53October, 2018
  • 39April, 2018
  • 32February, 2021
  • 19September, 2020
  • 18October, 2019
  • 14March, 2020
  • 11September, 2017
  • 10November, 2020
  • 8January, 2021
  • 7August, 2020
  • 7November, 2018
  • 6July, 2019
  • 5March, 2019
  • 5October, 2017
  • 4August, 2021
  • 4June, 2019
  • 3August, 2018
  • 3October, 2022
  • 2May, 2019
  • 1August, 2022
  • 1February, 2020
  • 1June, 2018
Available data
  • 636bam
  • 592bigWig
  • 465fastq
  • 397tsv
  • 183bed narrowPeak
  • 91bigBed narrowPeak
  • 39zippedFastqFolder
  • 29bed bed3+
  • 21bed broadPeak
  • 19tagAlign
  • 7bigBed broadPeak
  • 6bed bedMethyl
  • 6bigBed bedMethyl
  • 6txt
  • 5bedpe bed3+
  • 5hic
  • 3cool
  • 1bedpe
  • 1hdf5
Organism
  • 883Homo sapiens
Biosample type
  • 466tissue
  • 346primary cell
  • 76cell line
  • 3in vitro differentiated cells
Organ
  • 891pancreas
  • 791liver
  • 683connective tissue
  • 490adipose tissue
  • 461epithelium
  • 393heart
  • 354kidney
  • 286brain
  • 236vasculature
  • 230blood vessel
  • 159bone element
  • 141artery
  • 122limb
  • 97musculature of body
  • 69blood
  • 69bodily fluid
  • 61eye
  • 43nerve
  • 37embryo
  • 25spleen
  • 22vein
  • 20lung
  • 18ureter
  • 16skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 705AMP
  • 152HPAP
  • 34T1D
Genome assembly (visualization)
  • 605hg19
  • 584GRCh38
Lab
  • 670AMP-T2D consortium
  • 152Klaus Kaestner, Upenn
  • 51Kyle Gaulton, UCSD
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 4Bing Ren, UCSD
  • 2Mark McCarthy, Oxford
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 65inconsistent ontology term
  • 4audit script error
Audit category:
  • 54missing controlled_by
Audit category:
  • 9inconsistent control read length
  • 2inconsistent assembly
month_released!
  • November, 2019
BIOSAMPLE
ASSAY

891 results

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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
WGBS
snATAC-seq
MeRIP-seq
DNase-seq
Hi-C
Capture-C
FAIRE-seq
RRBS
small RNA-seq
CRISPR genome editing followed by sgRNA sequencing
pCHi-C
tissue
islet of Langerhans25950396741211
body of pancreas3354242
pancreas2162421111
endocrine pancreas16
primary cell
pancreatic alpha cell52133512311
pancreatic beta cell21132312161
pancreatic acinar cell489121
pancreatic ductal cell413410
pancreatic endocrine cell23
pancreatic delta cell11
pancreatic polypeptide-secreting cell9
pancreatic stellate cell4
co-expressing pancreatic endocrine cell2
unclassified pancreatic endocrine cell2
cell line
EndoC_BH132218621
Panc11311
in vitro differentiated cells
pancreatic PP cell3
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