Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Annotation Matrix

Click or enter search terms to filter the experiments included in the matrix.

Annotation type
  • 2639pQTL
  • 977histone modifications
  • 944chromatin state
  • 876candidate regulatory elements
  • 817binding sites
  • 691accessible chromatin
  • 413target gene predictions
  • 186eQTL
  • 141variant allelic effects
  • 130differential activity
  • 84Fine-mapped variants
  • 15gene expression
  • 13caQTL
  • 7sQTL
  • 5hQTL
  • 4variant to gene
  • 3meQTL
  • 3other
  • 1representative DNase hypersensitivity sites
Date released
  • 2639February, 2025
  • 2413February, 2021
  • 846September, 2022
  • November, 2021
  • 312February, 2024
  • 299May, 2021
  • 289June, 2020
  • 155May, 2020
  • 117March, 2020
  • 115September, 2023
  • 106January, 2022
  • 101October, 2022
  • 75August, 2021
  • 72January, 2020
  • 56January, 2021
  • 49May, 2022
  • 44November, 2022
  • 40May, 2024
  • 38March, 2025
  • 35August, 2017
  • 32February, 2023
  • 26February, 2020
  • 19April, 2020
  • 15March, 2023
  • 14November, 2019
  • 14October, 2019
  • 9May, 2019
  • 8April, 2019
  • 3September, 2018
  • 2January, 2025
  • 2November, 2020
  • 1August, 2020
  • 1August, 2022
  • 1June, 2021
Available data
  • 4081bed bed3+
  • 2903tsv
  • 869bed bed9
  • 324bigWig
  • 40bigBed bed9
  • 34bed bed9+
  • 16bigBed narrowPeak
  • 4bam
  • 3bed gappedPeak
  • 3xls
  • 2csv
Organism
  • 7901Homo sapiens
Collection Tags
  • 2635UK_Biobank
  • 1848ChIP-Atlas
  • 938ENCODE
  • 833EpiMap
  • 438DGA
  • 327T1D
  • 181BLUEPRINT
  • 1744DN
  • 130 T2DKP
  • 111T2D
  • 110KPMP
  • 101eQTLCatalogue
  • 100CMDGA
  • 96GTEx
  • 92AMP
  • 69T2DKP
  • 43STARNET
  • 26FNIH_projects-heart
  • 12FNIH_projects-liver
  • 12HPAP
  • 12ROADMAP
Biosample type
  • 4291tissue
  • 1973cell line
  • 1353primary cell
  • 326in vitro differentiated cells
  • 4stem cell
Organ
  • 2824vasculature
  • 2807bodily fluid
  • 2801blood
  • 2783blood vessel
  • 2653vein
  • 464epithelium
  • 328brain
  • 297kidney
  • 295connective tissue
  • 222musculature of body
  • 161lung
  • 157intestine
  • 154heart
  • 153pancreas
  • 149embryo
  • 147limb
  • 124skin of body
  • 111liver
  • 100large intestine
  • 86eye
  • 77extraembryonic component
  • 71uterus
  • 70adipose tissue
  • 62stomach
  • 59artery
  • 56bone element
  • 53mammary gland
  • 51prostate gland
  • 46lymph node
  • 44penis
  • 42small intestine
  • 39placenta
  • 38ureter
  • 34adrenal gland
  • 30gonad
  • 26spinal cord
  • 26thymus
  • 25esophagus
  • 21spleen
  • 17nerve
  • 17testis
  • 14lymphatic vessel
  • 13lymphoid tissue
  • 12ovary
  • 12pituitary gland
  • 12skeleton
  • 12thyroid gland
  • 10bone marrow
  • 10bronchus
  • 10mouth
  • 8breast
  • 5tongue
  • 5trachea
  • 5urinary bladder
  • 5vagina
  • 2nose
Project
  • 7742AMP
  • 110KPMP
  • 60T1D
  • 19LungMap
  • 13community
  • 5ITG
Genome assembly (visualization)
  • 4987hg19
  • 1576GRCh38
  • 4hg18
month_released!
  • November, 2021
software_used.software.name!
  • r
BIOSAMPLE
TYPE

7949 results

search-icontable-tab-icon
Clear Filters
pQTL
histone modifications
chromatin state
candidate regulatory elements
binding sites
accessible chromatin
target gene predictions
eQTL
variant allelic effects
differential activity
Fine-mapped variants
gene expression
caQTL
sQTL
hQTL
variant to gene
meQTL
other
representative DNase hypersensitivity sites
tissue
whole blood2635
heart121181512
stomach11921321
kidney2161511011
brain318131221
cell line
HeLa-S332152
H1-hESC112138
K5621712117
A5491183211
breast cancer cell119
primary cell
monocyte8611824121
CD8-positive, alpha-beta T cell301734
common myeloid progenitor, CD34-positive13141
CD14-positive monocyte4415
B cell8932
in vitro differentiated cells
neural progenitor cell1541101
hematopoietic multipotent progenitor cell110911
adipocyte162144
embryonic stem cell15161
T-cell acute lymphoblastic leukemia53
stem cell
H1-hESC1
mesenchymal stem cell1
mesendoderm1
undifferentiated ESC (H9 cell line)1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego