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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
38
ChIP-seq
6
WGBS
5
ATAC-seq
3
small RNA-seq
2
DNase-seq
2
pCHi-C
1
RNA microarray
Assay category
401
Transcription
38
DNA binding
7
DNA accessibility
6
DNA methylation
Target of assay
32
histone
32
histone modification
20
broad histone mark
12
narrow histone mark
transcription factor
6
control
Date released
386
February, 2021
45
August, 2017
October, 2018
12
July, 2019
2
February, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
March, 2020
1
May, 2023
1
November, 2018
1
November, 2019
October, 2017
1
October, 2019
Available data
407
bigWig
406
bam
401
tsv
8
fastq
8
tagAlign
7
bed narrowPeak
5
bigBed narrowPeak
3
bed broadPeak
2
bed bed3+
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
454
Homo sapiens
Biosample type
452
tissue
2
primary cell
1
in vitro differentiated cells
Organ
879
pancreas
625
connective tissue
513
epithelium
455
adipose tissue
453
liver
376
heart
344
kidney
267
brain
227
vasculature
222
blood vessel
159
bone element
136
artery
122
limb
96
musculature of body
60
eye
43
nerve
34
embryo
22
vein
20
lung
18
blood
18
bodily fluid
18
spleen
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
455
AMP
Genome assembly (visualization)
408
hg19
406
GRCh38
Lab
455
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
month_released!
October, 2017
October, 2018
organ_slims!
skin of body
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
455 results
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total RNA-seq
ChIP-seq
WGBS
ATAC-seq
small RNA-seq
DNase-seq
pCHi-C
RNA microarray
tissue
adipose tissue
382
2
3
3
1
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
1
1
1
omental fat pad
5
1
2
visceral abdominal adipose tissue
3
+ See 1 more…
primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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