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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
73
ChIP-seq
8
snATAC-seq
2
WGBS
1
ATAC-seq
1
DNase-seq
1
pCHi-C
Assay category
73
DNA binding
10
DNA accessibility
2
DNA methylation
Target of assay
57
transcription factor
14
control
10
RNA binding protein
10
chromatin remodeller
histone
7
histone modification
4
broad histone mark
3
narrow histone mark
3
other context
3
other post-translational modification
Date released
34
December, 2018
24
November, 2018
18
January, 2019
8
January, 2021
1
January, 2018
1
March, 2020
October, 2017
Available data
76
bam
76
fastq
63
bigWig
60
bed narrowPeak
60
bigBed narrowPeak
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
1
tsv
Organism
86
Homo sapiens
Biosample type
60
cell line
18
tissue
8
primary cell
Organ
790
pancreas
689
liver
605
connective tissue
458
adipose tissue
431
epithelium
324
kidney
296
heart
vasculature
160
blood vessel
159
bone element
121
artery
95
brain
73
limb
68
blood
68
bodily fluid
63
musculature of body
58
eye
25
embryo
20
lung
19
nerve
18
spleen
18
ureter
16
skeleton
7
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
78
AMP
8
T1D
Genome assembly (visualization)
62
GRCh38
61
hg19
Lab
78
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
month_released!
October, 2017
organ_slims!
vasculature
target.investigated_as!
histone
BIOSAMPLE
ASSAY
86 results
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ChIP-seq
snATAC-seq
WGBS
ATAC-seq
DNase-seq
pCHi-C
cell line
GM12878
59
1
tissue
spleen
14
2
1
1
primary cell
peripheral blood mononuclear cell
8
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