Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 203ChIP-seq
  • 32DNase-seq
  • 17total RNA-seq
  • 4small RNA-seq
  • 3ATAC-seq
  • 3Hi-C
  • 3single cell RNA-seq
  • 2RRBS
  • 2pCHi-C
  • 1FAIRE-seq
Assay category
  • 203DNA binding
  • 36DNA accessibility
  • 24Transcription
  • 33D chromatin structure
  • 2DNA methylation
Target of assay
  • 175histone
  • 175histone modification
  • 115narrow histone mark
  • 60broad histone mark
  • 28control
  • 3RNA binding protein
  • 3transcription factor
Date released
  • 91November, 2017
  • 86October, 2019
  • 30June, 2019
  • 28May, 2019
  • 18July, 2019
  • October, 2017
  • 12February, 2020
  • 2March, 2020
  • 2November, 2018
  • 1February, 2023
Available data
  • 234bam
  • 215bigWig
  • 197bed narrowPeak
  • 121bigBed narrowPeak
  • 104tagAlign
  • 44bed broadPeak
  • 38bigBed broadPeak
  • 35bed bed3+
  • 26tsv
  • 11fastq
  • 3hdf5
  • 2bed bedMethyl
  • 2bigBed bedMethyl
  • 1bed bed3
  • 1tagAlign bed3+
Organism
  • 270Homo sapiens
Biosample type
  • 249tissue
  • 21primary cell
Organ
  • 941pancreas
  • 791liver
  • 683connective tissue
  • 524epithelium
  • 490adipose tissue
  • 393heart
  • 354kidney
  • 270brain
  • 236vasculature
  • 230blood vessel
  • 159bone element
  • 141artery
  • 122limb
  • 96musculature of body
  • 69blood
  • 69bodily fluid
  • 61eye
  • 43nerve
  • 37embryo
  • 24spleen
  • 22vein
  • 20lung
  • 18ureter
  • 16skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 270AMP
Genome assembly (visualization)
  • 210GRCh38
  • 158hg19
Lab
  • 270AMP-T2D consortium
Audit category:
  • 3inconsistent ontology term
month_released!
  • October, 2017
BIOSAMPLE
ASSAY

270 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
DNase-seq
total RNA-seq
small RNA-seq
ATAC-seq
Hi-C
single cell RNA-seq
RRBS
pCHi-C
FAIRE-seq
tissue
layer of hippocampus23
brain514111
caudate nucleus1511
substantia nigra161
temporal lobe1511
primary cell
astrocyte of the cerebellum311
brain microvascular endothelial cell311
choroid plexus epithelial cell311
brain pericyte11
cerebellar granule cell2
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego