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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 398total RNA-seq
  • 50ChIP-seq
  • 6ATAC-seq
  • 6WGBS
  • 3small RNA-seq
  • 2DNase-seq
  • 2pCHi-C
  • 1RNA microarray
Assay category
  • 401Transcription
  • 50DNA binding
  • 8DNA accessibility
  • 6DNA methylation
Target of assay
  • 32histone
  • 32histone modification
  • 20broad histone mark
  • 12narrow histone mark
  • 12transcription factor
  • 6control
Date released
  • 386February, 2021
  • 57August, 2017
  • October, 2018
  • 12July, 2019
  • 2February, 2020
  • 1August, 2018
  • 1August, 2021
  • 1February, 2023
  • 1January, 2018
  • 1June, 2019
  • 1March, 2020
  • 1May, 2023
  • 1November, 2018
  • 1November, 2019
  • 1October, 2017
  • 1October, 2019
Available data
  • 420bigWig
  • 419bam
  • 401tsv
  • 21fastq
  • 8bed narrowPeak
  • 8tagAlign
  • 6bed bed3+
  • 5bigBed narrowPeak
  • 3bed broadPeak
  • 2bed bedMethyl
  • 2bigBed bedMethyl
  • 2bigBed broadPeak
  • 1bedpe bed3+
Organism
  • 467Homo sapiens
Biosample type
  • 465tissue
  • 2primary cell
  • 1in vitro differentiated cells
Organ
  • 893pancreas
  • 791liver
  • 661connective tissue
  • 522epithelium
  • 468adipose tissue
  • 393heart
  • 354kidney
  • 286brain
  • 236vasculature
  • 230blood vessel
  • 159bone element
  • 141artery
  • 122limb
  • 96musculature of body
  • 69blood
  • 69bodily fluid
  • 61eye
  • 43nerve
  • 37embryo
  • 25spleen
  • 22vein
  • 20lung
  • 18ureter
  • 16skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 468AMP
Genome assembly (visualization)
  • 421hg19
  • 419GRCh38
Lab
  • 468AMP-T2D consortium
Audit category:
  • 1inconsistent ontology term
Audit category:
  • 12missing controlled_by
month_released!
  • October, 2018
BIOSAMPLE
ASSAY

468 results

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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
WGBS
small RNA-seq
DNase-seq
pCHi-C
RNA microarray
tissue
adipose tissue3822331
subcutaneous abdominal adipose tissue363
white adipose tissue12
subcutaneous adipose tissue7111
omental fat pad5112
primary cell
mesenchymal stem cell of adipose11
in vitro differentiated cells
white fat cell1
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