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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
121
ChIP-seq
Assay category
121
DNA binding
Target of assay
121
histone
121
histone modification
62
narrow histone mark
59
broad histone mark
42
control
9
transcription factor
5
nucleotide modification
RNA binding protein
Date released
66
August, 2017
32
September, 2018
October, 2018
10
November, 2019
7
October, 2019
3
March, 2020
2
May, 2021
1
May, 2019
Available data
112
bigWig
107
bam
97
bed narrowPeak
84
fastq
19
bigBed narrowPeak
15
tagAlign
12
bed bed3+
12
bed broadPeak
Organism
115
Homo sapiens
Biosample type
58
primary cell
43
tissue
19
cell line
1
in vitro differentiated cells
Organ
187
brain
121
pancreas
102
liver
97
heart
93
epithelium
78
connective tissue
71
vasculature
70
blood vessel
49
limb
33
musculature of body
32
adipose tissue
30
kidney
24
nerve
20
artery
15
vein
12
embryo
6
spleen
4
gonad
4
ovary
3
eye
1
blood
1
bodily fluid
1
lymph node
1
pituitary gland
Project
117
AMP
4
T1D
Genome assembly (visualization)
112
hg19
106
GRCh38
Lab
121
AMP-T2D consortium
Audit category:
12
inconsistent ontology term
Audit category:
48
missing controlled_by
Audit category:
8
inconsistent control read length
1
inconsistent assembly
month_released!
October, 2018
organ_slims!
skeleton
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
121 results
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Clear Filters
ChIP-seq
primary cell
pancreatic endocrine cell
23
pancreatic ductal cell
13
pancreatic acinar cell
8
pancreatic alpha cell
7
pancreatic beta cell
7
tissue
islet of Langerhans
30
pancreas
12
body of pancreas
1
cell line
EndoC_BH1
12
Panc1
7
in vitro differentiated cells
pancreatic PP cell
1
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