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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
32
ChIP-seq
6
WGBS
5
ATAC-seq
3
small RNA-seq
2
DNase-seq
2
pCHi-C
1
RNA microarray
Assay category
401
Transcription
32
DNA binding
7
DNA accessibility
6
DNA methylation
Target of assay
32
histone
32
histone modification
control
20
broad histone mark
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
386
February, 2021
39
August, 2017
12
July, 2019
2
February, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
March, 2020
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
October, 2019
Available data
407
bigWig
406
bam
401
tsv
8
bed narrowPeak
8
fastq
7
tagAlign
4
bigBed narrowPeak
3
bed broadPeak
2
bed bed3+
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
448
Homo sapiens
Biosample type
446
tissue
2
primary cell
1
in vitro differentiated cells
Organ
862
pancreas
605
connective tissue
453
epithelium
449
adipose tissue
348
heart
338
liver
315
kidney
173
brain
165
vasculature
161
blood vessel
159
bone element
106
artery
90
musculature of body
52
limb
38
eye
27
embryo
20
lung
18
ureter
16
skeleton
12
blood
12
bodily fluid
spleen
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
1
vein
Project
449
AMP
Genome assembly (visualization)
408
hg19
407
GRCh38
Lab
449
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
month_released!
October, 2019
organ_slims!
spleen
target.investigated_as!
control
transcription factor
BIOSAMPLE
ASSAY
449 results
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total RNA-seq
ChIP-seq
WGBS
ATAC-seq
small RNA-seq
DNase-seq
pCHi-C
RNA microarray
tissue
adipose tissue
382
1
3
2
1
subcutaneous abdominal adipose tissue
31
3
subcutaneous adipose tissue
7
1
1
1
omental fat pad
5
1
1
2
visceral abdominal adipose tissue
3
+ See 1 more…
primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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