Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
401
total RNA-seq
42
ChIP-seq
34
DNase-seq
11
ATAC-seq
7
WGBS
4
Hi-C
3
pCHi-C
3
small RNA-seq
1
RNA microarray
Assay category
404
Transcription
45
DNA accessibility
42
DNA binding
7
DNA methylation
4
3D chromatin structure
Target of assay
38
histone
histone modification
25
control
24
broad histone mark
17
transcription factor
14
narrow histone mark
5
RNA binding protein
Date released
392
February, 2021
33
June, 2019
October, 2019
25
August, 2017
23
October, 2018
17
July, 2019
5
February, 2020
2
March, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
May, 2019
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
481
bam
455
bigWig
405
tsv
49
bed narrowPeak
43
fastq
40
bigBed narrowPeak
38
bed bed3+
34
bed broadPeak
34
bigBed broadPeak
3
bed bedMethyl
3
bigBed bedMethyl
1
bedpe bed3+
1
tagAlign
Organism
505
Homo sapiens
Biosample type
503
tissue
2
primary cell
1
in vitro differentiated cells
Organ
784
pancreas
686
liver
603
connective tissue
458
adipose tissue
417
epithelium
302
kidney
293
heart
159
bone element
151
vasculature
146
blood vessel
113
artery
90
brain
68
blood
68
bodily fluid
63
musculature of body
47
limb
39
eye
25
embryo
20
lung
19
spleen
18
ureter
16
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
1
vein
Project
506
AMP
Genome assembly (visualization)
462
GRCh38
461
hg19
Lab
506
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
12
missing controlled_by
month_released!
October, 2019
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
506 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
RNA microarray
tissue
adipose tissue
382
1
2
3
1
subcutaneous adipose tissue
7
12
1
1
1
omental fat pad
5
11
2
1
1
muscle of arm
17
muscle of leg
1
13
1
+ See 16 more…
primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
See all biosamples
Download