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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
60
ChIP-seq
8
snATAC-seq
1
ATAC-seq
1
total RNA-seq
Assay category
60
DNA binding
9
DNA accessibility
1
Transcription
Target of assay
51
transcription factor
10
RNA binding protein
10
chromatin remodeller
6
control
1
histone
1
histone modification
1
narrow histone mark
Date released
October, 2019
27
December, 2018
18
January, 2019
15
November, 2018
8
January, 2021
1
February, 2020
1
January, 2018
Available data
60
bam
60
fastq
55
bigWig
54
bed narrowPeak
54
bigBed narrowPeak
1
tsv
Organism
70
Homo sapiens
Biosample type
61
cell line
8
primary cell
1
tissue
Organ
928
pancreas
784
liver
680
connective tissue
490
adipose tissue
489
epithelium
385
heart
324
kidney
200
brain
189
vasculature
183
blood vessel
159
bone element
115
artery
96
musculature of body
69
blood
69
bodily fluid
53
limb
40
eye
37
embryo
25
spleen
20
lung
ureter
16
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
1
vein
Project
62
AMP
8
T1D
Genome assembly (visualization)
55
hg19
54
GRCh38
Lab
62
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
month_released!
October, 2019
organ_slims!
ureter
BIOSAMPLE
ASSAY
70 results
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Clear Filters
ChIP-seq
snATAC-seq
ATAC-seq
total RNA-seq
cell line
GM12878
60
1
primary cell
peripheral blood mononuclear cell
8
tissue
tibial nerve
1
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