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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
131
ChIP-seq
31
DNase-seq
16
total RNA-seq
4
pCHi-C
4
small RNA-seq
3
ATAC-seq
3
single cell RNA-seq
2
Hi-C
2
RRBS
1
FAIRE-seq
Assay category
131
DNA binding
35
DNA accessibility
23
Transcription
2
3D chromatin structure
2
DNA methylation
Target of assay
109
histone
109
histone modification
67
broad histone mark
42
narrow histone mark
23
control
2
RNA binding protein
2
transcription factor
Date released
October, 2019
88
November, 2017
29
June, 2019
28
May, 2019
17
July, 2019
16
October, 2017
12
February, 2020
4
March, 2020
2
November, 2018
1
February, 2023
Available data
156
bam
141
bigWig
125
bed narrowPeak
124
bigBed narrowPeak
80
tagAlign
44
bed broadPeak
35
bigBed broadPeak
33
bed bed3+
27
tsv
18
fastq
2
bed bedMethyl
2
bigBed bedMethyl
2
hdf5
1
bed bed3
Organism
197
Homo sapiens
Biosample type
181
tissue
16
primary cell
Organ
928
pancreas
784
liver
680
connective tissue
490
adipose tissue
489
epithelium
385
heart
324
kidney
200
brain
189
vasculature
blood vessel
159
bone element
115
artery
96
musculature of body
69
blood
69
bodily fluid
53
limb
40
eye
37
embryo
25
spleen
20
lung
18
ureter
16
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
1
vein
Project
197
AMP
Genome assembly (visualization)
136
GRCh38
81
hg19
Lab
197
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
4
missing controlled_by
month_released!
October, 2019
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
197 results
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ChIP-seq
DNase-seq
total RNA-seq
pCHi-C
small RNA-seq
ATAC-seq
single cell RNA-seq
Hi-C
RRBS
FAIRE-seq
tissue
brain
15
14
1
1
layer of hippocampus
22
caudate nucleus
15
1
1
temporal lobe
15
1
1
substantia nigra
15
1
+ See 25 more…
primary cell
astrocyte of the cerebellum
3
1
1
choroid plexus epithelial cell
3
1
1
brain pericyte
1
1
cerebellar granule cell
2
Purkinje cell
1
+ See 1 more…
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