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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 134ChIP-seq
  • 32DNase-seq
  • 16total RNA-seq
  • 4small RNA-seq
  • 3ATAC-seq
  • 3Hi-C
  • 3single cell RNA-seq
  • 2RRBS
  • 2pCHi-C
  • 1FAIRE-seq
Assay category
  • 134DNA binding
  • 36DNA accessibility
  • 23Transcription
  • 33D chromatin structure
  • 2DNA methylation
Target of assay
  • 110histone
  • 110histone modification
  • 67broad histone mark
  • 43narrow histone mark
  • 24control
  • 3RNA binding protein
  • 3transcription factor
Date released
  • 91November, 2017
  • October, 2019
  • 30June, 2019
  • 28May, 2019
  • 18July, 2019
  • 16October, 2017
  • 12February, 2020
  • 2March, 2020
  • 2November, 2018
  • 1February, 2023
Available data
  • 160bam
  • 146bigWig
  • 128bed narrowPeak
  • 127bigBed narrowPeak
  • 80tagAlign
  • 47bed broadPeak
  • 38bigBed broadPeak
  • 35bed bed3+
  • 25tsv
  • 21fastq
  • 3hdf5
  • 2bed bedMethyl
  • 2bigBed bedMethyl
  • 1bed bed3
Organism
  • 200Homo sapiens
Biosample type
  • 179tissue
  • 21primary cell
Organ
  • 928pancreas
  • 784liver
  • 680connective tissue
  • 490adipose tissue
  • 489epithelium
  • 385heart
  • 324kidney
  • 200brain
  • 189vasculature
  • 183blood vessel
  • 159bone element
  • 115artery
  • 96musculature of body
  • 69blood
  • 69bodily fluid
  • 53limb
  • 40eye
  • 37embryo
  • 25spleen
  • 20lung
  • 18ureter
  • 16skeleton
  • 2intestine
  • 2pericardium
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1mammary gland
  • 1nerve
  • 1ovary
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
  • 1vein
Project
  • 200AMP
Genome assembly (visualization)
  • 139GRCh38
  • 86hg19
Lab
  • 200AMP-T2D consortium
Audit category:
  • 1inconsistent ontology term
Audit category:
  • 4missing controlled_by
month_released!
  • October, 2019
BIOSAMPLE
ASSAY

200 results

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Clear Filters
ChIP-seq
DNase-seq
total RNA-seq
small RNA-seq
ATAC-seq
Hi-C
single cell RNA-seq
RRBS
pCHi-C
FAIRE-seq
tissue
brain151411
layer of hippocampus22
caudate nucleus1511
temporal lobe1511
substantia nigra151
primary cell
astrocyte of the cerebellum311
brain microvascular endothelial cell311
choroid plexus epithelial cell311
brain pericyte11
cerebellar granule cell2
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