Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 129ChIP-seq
  • 93single cell RNA-seq
  • 70total RNA-seq
  • 47ATAC-seq
  • 30DNase-seq
  • 8WGBS
  • 3pCHi-C
  • 2Hi-C
  • 2RRBS
  • 1small RNA-seq
Assay category
  • 164Transcription
  • 129DNA binding
  • 77DNA accessibility
  • 10DNA methylation
  • 23D chromatin structure
Target of assay
  • 92histone
  • 92histone modification
  • 54broad histone mark
  • 38narrow histone mark
  • 20control
  • 17transcription factor
  • 11RNA binding protein
Date released
  • 92August, 2021
  • 66February, 2021
  • 57April, 2019
  • 40May, 2024
  • 36February, 2023
  • 35June, 2019
  • 25July, 2019
  • 21May, 2019
  • October, 2019
  • 7March, 2020
  • 3February, 2020
  • 3May, 2021
Available data
  • 217bigWig
  • 204bam
  • 186bed narrowPeak
  • 166tsv
  • 94bigBed narrowPeak
  • 30bed bed3+
  • 30bed broadPeak
  • 30bigBed broadPeak
  • 8bed bedMethyl
  • 8bigBed bedMethyl
  • 6tagAlign
  • 2bedpe bed3+
  • 2hic
Organism
  • 385Homo sapiens
Biosample type
  • 305tissue
  • 66cell line
  • 13primary cell
  • 1in vitro differentiated cells
Organ
  • 928pancreas
  • 784liver
  • 680connective tissue
  • 490adipose tissue
  • 489epithelium
  • 385heart
  • 324kidney
  • 200brain
  • 189vasculature
  • 183blood vessel
  • 159bone element
  • 115artery
  • 96musculature of body
  • 69blood
  • 69bodily fluid
  • 53limb
  • 40eye
  • 37embryo
  • 25spleen
  • 20lung
  • 18ureter
  • 16skeleton
  • 2intestine
  • 2pericardium
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1mammary gland
  • 1nerve
  • 1ovary
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
  • 1vein
Project
  • 385AMP
Genome assembly (visualization)
  • 259GRCh38
  • 180hg19
Lab
  • 345AMP-T2D consortium
  • 40Patrick T. Ellinor, Broad
Audit category:
  • 6inconsistent ontology term
month_released!
  • October, 2019
BIOSAMPLE
ASSAY

385 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
single cell RNA-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
pCHi-C
Hi-C
RRBS
small RNA-seq
tissue
heart left ventricle35183234111
left cardiac atrium40181
coronary artery51362
heart right ventricle131711211
heart9121811
cell line
smooth muscle cell of the coronary artery6528
primary cell
cardiac fibroblast531
cardiac atrium fibroblast1
cardiac ventricle fibroblast1
endothelial cell of coronary artery1
smooth muscle cell of the coronary artery1
in vitro differentiated cells
cardiac fibroblast1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego