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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
368
ChIP-seq
188
total RNA-seq
22
ATAC-seq
6
DNase-seq
5
WGBS
5
pCHi-C
4
Hi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
368
DNA binding
192
Transcription
28
DNA accessibility
7
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Target of assay
338
transcription factor
108
control
98
histone modification
histone
recombinant protein
58
RNA binding protein
58
narrow histone mark
39
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
234
November, 2017
167
May, 2020
46
December, 2017
40
May, 2022
37
November, 2018
29
August, 2021
22
August, 2017
10
July, 2019
5
December, 2019
5
January, 2019
5
March, 2020
3
February, 2021
2
June, 2019
October, 2019
1
December, 2018
1
February, 2020
Available data
518
bam
458
bigWig
339
fastq
279
bed narrowPeak
242
bigBed narrowPeak
175
tsv
49
bed broadPeak
49
bigBed broadPeak
28
tagAlign
10
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
607
Homo sapiens
Biosample type
301
cell line
293
tissue
10
primary cell
3
in vitro differentiated cells
Organ
784
pancreas
605
liver
603
connective tissue
458
adipose tissue
417
epithelium
302
kidney
293
heart
159
bone element
151
vasculature
146
blood vessel
113
artery
90
brain
68
blood
68
bodily fluid
63
musculature of body
47
limb
39
eye
25
embryo
20
lung
19
spleen
18
ureter
16
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
1
vein
Project
607
AMP
Genome assembly (visualization)
463
hg19
379
GRCh38
Lab
539
AMP-T2D consortium
40
Karen Mohlke, UNC
28
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent replicate
Audit category:
11
missing controlled_by
Audit category:
14
inconsistent control read length
8
inconsistent control run_type
month_released!
October, 2019
target.investigated_as!
histone
recombinant protein
BIOSAMPLE
ASSAY
607 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
pCHi-C
Hi-C
small RNA-seq
RRBS
STARR-seq
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
278
14
1
1
2
2
2
1
tissue
liver
81
166
20
2
3
1
1
1
1
1
right lobe of liver
5
3
1
2
1
2
sigmoid colon
1
small intestine
1
primary cell
hepatocyte
1
5
1
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
in vitro differentiated cells
hepatocyte
3
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