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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
75
ATAC-seq
68
DNase-seq
64
single cell RNA-seq
50
total RNA-seq
23
ChIP-seq
6
snATAC-seq
3
snDrop-seq
2
STARR-seq
2
pCHi-C
1
FAIRE-seq
1
Hi-C
1
RNA microarray
1
RRBS
1
small RNA-seq
Assay category
150
DNA accessibility
115
Transcription
23
DNA binding
1
3D chromatin structure
1
DNA methylation
Target of assay
18
histone
18
histone modification
10
broad histone mark
8
narrow histone mark
4
control
1
RNA binding protein
1
transcription factor
Date released
130
August, 2021
68
June, 2019
47
September, 2023
23
April, 2019
October, 2019
14
May, 2023
8
February, 2021
4
July, 2019
2
December, 2019
2
March, 2020
Available data
151
bed narrowPeak
94
bam
89
bigWig
87
bigBed narrowPeak
68
bed bed3+
68
bed broadPeak
68
bigBed broadPeak
64
xls
62
txt
13
tsv
5
csv
1
bed bedMethyl
1
bigBed bedMethyl
1
hic
Organism
298
Homo sapiens
Biosample type
294
tissue
4
cell line
Organ
pancreas
784
liver
680
connective tissue
490
adipose tissue
epithelium
385
heart
324
kidney
200
brain
189
vasculature
183
blood vessel
159
bone element
115
artery
96
musculature of body
69
blood
69
bodily fluid
53
limb
40
eye
37
embryo
25
spleen
20
lung
18
ureter
16
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
1
vein
Project
251
AMP
47
KPMP
Genome assembly (visualization)
163
GRCh38
90
hg19
Lab
142
Katalin Susztak, Upenn
107
AMP-T2D consortium
47
KPMP
2
Bing Ren, UCSD
Audit category:
6
audit script error
2
inconsistent ontology term
month_released!
October, 2019
organ_slims!
epithelium
pancreas
BIOSAMPLE
ASSAY
298 results
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ATAC-seq
DNase-seq
single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
snDrop-seq
STARR-seq
pCHi-C
FAIRE-seq
Hi-C
RNA microarray
RRBS
small RNA-seq
tissue
kidney
75
13
64
49
23
6
1
1
1
renal cortex interstitium
11
renal pelvis
10
right kidney
10
left kidney
9
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cell line
HEK293T
2
RCC 7860 VHL
1
RCC 7860 vector
1
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