Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 78DNase-seq
  • 75ATAC-seq
  • 64single cell RNA-seq
  • 54total RNA-seq
  • 31ChIP-seq
  • 6snATAC-seq
  • 4RRBS
  • 3snDrop-seq
  • 2RNA microarray
  • 2STARR-seq
  • 2pCHi-C
  • 1FAIRE-seq
  • 1Hi-C
  • 1small RNA-seq
Assay category
  • 160DNA accessibility
  • 119Transcription
  • 31DNA binding
  • 4DNA methylation
  • 13D chromatin structure
Target of assay
  • 22histone
  • 22histone modification
  • 12broad histone mark
  • 10narrow histone mark
  • 6control
  • 3RNA binding protein
  • 3transcription factor
Date released
  • 130August, 2021
  • 81June, 2019
  • 47September, 2023
  • October, 2019
  • 23April, 2019
  • 14May, 2023
  • 11July, 2019
  • 8February, 2021
  • 5May, 2019
  • 3December, 2019
  • 2March, 2020
Available data
  • 167bed narrowPeak
  • 116bam
  • 109bigWig
  • 103bigBed narrowPeak
  • 78bed bed3+
  • 78bed broadPeak
  • 78bigBed broadPeak
  • 64xls
  • 62txt
  • 18tsv
  • 5csv
  • 4bed bedMethyl
  • 4bigBed bedMethyl
  • 1hic
Organism
  • 324Homo sapiens
Biosample type
  • 295tissue
  • 25primary cell
  • 4cell line
Organ
  • 928pancreas
  • 784liver
  • 680connective tissue
  • 490adipose tissue
  • 489epithelium
  • 385heart
  • 324kidney
  • 200brain
  • 189vasculature
  • 183blood vessel
  • 159bone element
  • 115artery
  • 96musculature of body
  • 69blood
  • 69bodily fluid
  • 53limb
  • 40eye
  • 37embryo
  • 25spleen
  • 20lung
  • 18ureter
  • 16skeleton
  • 2intestine
  • 2pericardium
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1mammary gland
  • 1nerve
  • 1ovary
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
  • 1vein
Project
  • 277AMP
  • 47KPMP
Genome assembly (visualization)
  • 183GRCh38
  • 107hg19
Lab
  • 142Katalin Susztak, Upenn
  • 133AMP-T2D consortium
  • 47KPMP
  • 2Bing Ren, UCSD
Audit category:
  • 10inconsistent ontology term
  • 7audit script error
month_released!
  • October, 2019
BIOSAMPLE
ASSAY

324 results

search-icontable-tab-icon
Clear Filters
DNase-seq
ATAC-seq
single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
RRBS
snDrop-seq
RNA microarray
STARR-seq
pCHi-C
FAIRE-seq
Hi-C
small RNA-seq
tissue
kidney13756449236111
renal cortex interstitium11
renal pelvis10
right kidney10
left kidney9
primary cell
kidney epithelial cell1151
epithelial cell of proximal tubule1131
renal cortical epithelial cell111
glomerular endothelial cell11
glomerular visceral epithelial cell2
cell line
HEK293T2
RCC 7860 VHL1
RCC 7860 vector1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego