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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
DNase-seq
27
ChIP-seq
7
ATAC-seq
4
Hi-C
3
WGBS
3
total RNA-seq
1
pCHi-C
Assay category
40
DNA accessibility
27
DNA binding
4
3D chromatin structure
3
DNA methylation
3
Transcription
Target of assay
12
histone
12
histone modification
9
control
8
broad histone mark
6
transcription factor
4
narrow histone mark
3
other context
3
other post-translational modification
Date released
October, 2019
32
June, 2019
9
November, 2018
7
December, 2018
7
January, 2019
7
May, 2019
6
February, 2021
5
July, 2019
3
February, 2020
1
March, 2020
1
October, 2017
Available data
70
bam
58
bed narrowPeak
55
bigWig
51
bigBed narrowPeak
33
bed bed3+
33
bed broadPeak
33
bigBed broadPeak
24
fastq
4
tsv
3
bed bedMethyl
3
bigBed bedMethyl
Organism
78
Homo sapiens
Biosample type
78
tissue
Organ
928
pancreas
784
liver
680
connective tissue
490
adipose tissue
489
epithelium
385
heart
324
kidney
200
brain
189
vasculature
183
blood vessel
159
bone element
115
artery
96
musculature of body
69
blood
69
bodily fluid
53
limb
40
eye
37
embryo
25
spleen
20
lung
18
ureter
16
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
1
vein
Project
78
AMP
Genome assembly (visualization)
60
GRCh38
58
hg19
Lab
78
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
month_released!
October, 2019
BIOSAMPLE
ASSAY
78 results
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DNase-seq
ChIP-seq
ATAC-seq
Hi-C
WGBS
total RNA-seq
pCHi-C
tissue
spleen
1
20
1
2
1
muscle of leg
13
7
1
muscle of arm
17
gastrocnemius medialis
4
1
distal epiphysis of femur
1
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